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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G50090 | AT | Annotation by Michelle Graham. TAIR10: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | chr1:18554641-18556794 REVERSE LENGTH=367 | SoyBase | E_val: 4.00E-155 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009081 | GO-bp | Annotation by Michelle Graham. GO Biological Process: branched-chain amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004084 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: branched-chain-amino-acid transaminase activity | SoyBase | N/A | ISS |
| KOG0975 | KOG | Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily | JGI | ISS | |
| PTHR11825 | Panther | SUBGROUP IIII AMINOTRANSFERASE | JGI | ISS | |
| PTHR11825:SF2 | Panther | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE | JGI | ISS | |
| PF01063 | PFAM | Aminotransferase class IV | JGI | ISS | |
| UniRef100_I1KL95 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Branched-chain-amino-acid aminotransferase n=1 Tax=Glycine max RepID=I1KL95_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338E2C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338E2C related cluster n=1 Tax=unknown RepID=UPI0002338E2C | SoyBase | E_val: 0 | ISS |
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Glyma08g06766 not represented in the dataset |
Glyma08g06766 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g063200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g06766.2 sequence type=transcript gene model=Glyma08g06766 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCCCCCTTCTATTTTAGGCAACTGCAAGACGGTTCTGAAATGTAATACTGCTGGGGAAAACTATGCTGACATTAATTGGGATGAGCTTGGATTTAGTCTAGTTCCAACAGATTACATGTATGTCATGAAATGTGCAAAGGGAGATAAGTTTTCACAAGGATCCATCCTTCCCTATGGAAACTTAGAGATTAACCCTTCTGCTGGAATCTTAAATTATGGGCAGGGAATCTTTGAGGGGCTAAAGGCACATAGAACTGAGGATGGGTGCATACTTCTATTTCGACCAGATGAGAATGCTCAACGCATGAAGAGAAGTGCAGATAGATTGTGTATGCCATCTCCATCTAATGACCAATTTGTTAATGCTGTAAAGCAGATAGTTCTTGCAAATAAACGCTGGGTGCCTCCTTCAGGAAAAGGGTCCCTATATATTAGGCCATTGCTCATGGGAACTGGAGCATTGTTAGGTTTGGCACCAGCACCAGACTATACATTTCTTATTTATTGTTCTCCAATTGGCAGCTACCACAAGGATAAAAAAAGACTAATTTCATCTTTGTTAATTATTACAGGTGCACTAAACTTGAAAGTTGAGGATAAACTATATAAAGCAATATCTGGCAGTGGAGGAACCGGAGGAATCAAAAGTGTCACCAATTATGCCCCTGTTTATACTGCAATAACTGATGCAAAGGCCAACGGATTCTCCGATGTGTTGTTCTTGGACTCAGCAACTGGAAAATATATAGAGGAGGCCTCAGCATGCAATGTATTTGTTGTGAAGGTATACCCCGACTATTAAATCTGTATGTCTAAACTCTAAACCATGTGGAAATTTTATTATGTATGAACAAAATTTATTTAATTAAGTTATTCCTATATATGAAGGGCAACGCTAGCTTCACTCCTGCAATAGATGGAACCATCCTTCCAGGAATCATGGGAAAATCCATCATTGAGATTGCCATTGACTTGGGTTATCGGGTTTTTAATTTTCCTTCAATTATCGGCATGTAAATTGATTAATCTTGATGGTTTCATTTTCTACAAATTTTTGGTTTTCCAAACTATTCCCTATCACAATGTTATAACCATAAGTCACGGTTACTTGAATTATGTTCAGGTATTGGAACGTGCTGTATCAGTGGAGGAAATGCTGGGTGCTGATGAAATGTTCTGCACAGGAACTGCAATGGTTGTCAACTCTATTGCATCTGTAACCTATAAGAAAACAAGAATGGATTACAAAACAGGACCAGAAGCATTGTCTGCAAAACTACGCACAACACTTGTTGGAATTCAAACAGGGTGCGTTGAGGACAAAAAGTCATGGACAGTCCTAGTAGATTGAGCAATGAGCAATGCTTGTTAAATGATAGATGATTGTTTATTTTTCCTAATCAATAAGTTCTTATT
>Glyma08g06766.1 sequence type=CDS gene model=Glyma08g06766 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCCCCCTTCTATTTTAGGCAACTGCAAGACGGTTCTGAAATGTAATACTGCTGGGGAAAACTATGCTGACATTAATTGGGATGAGCTTGGATTTAGTCTAGTTCCAACAGATTACATGTATGTCATGAAATGTGCAAAGGGAGATAAGTTTTCACAAGGATCCATCCTTCCCTATGGAAACTTAGAGATTAACCCTTCTGCTGGAATCTTAAATTATGGGCAGGGAATCTTTGAGGGGCTAAAGGCACATAGAACTGAGGATGGGTGCATACTTCTATTTCGACCAGATGAGAATGCTCAACGCATGAAGAGAAGTGCAGATAGATTGTGTATGCCATCTCCATCTAATGACCAATTTGTTAATGCTGTAAAGCAGATAGTTCTTGCAAATAAACGCTGGGTGCCTCCTTCAGGAAAAGGGTCCCTATATATTAGGCCATTGCTCATGGGAACTGGAGCATTGTTAGGTTTGGCACCAGCACCAGACTATACATTTCTTATTTATTGTTCTCCAATTGGCAGCTACCACAAGGATAAAAAAAGACTAATTTCATCTTTGTTAATTATTACAGGTGCACTAAACTTGAAAGTTGAGGATAAACTATATAAAGCAATATCTGGCAGTGGAGGAACCGGAGGAATCAAAAGTGTCACCAATTATGCCCCTGTTTATACTGCAATAACTGATGCAAAGGCCAACGGATTCTCCGATGTGTTGTTCTTGGACTCAGCAACTGGAAAATATATAGAGGAGGCCTCAGCATGCAATGTATTTGTTGTGAAGGGCAACGCTAGCTTCACTCCTGCAATAGATGGAACCATCCTTCCAGGAATCATGGGAAAATCCATCATTGAGATTGCCATTGACTTGGGTTATCGGGTATTGGAACGTGCTGTATCAGTGGAGGAAATGCTGGGTGCTGATGAAATGTTCTGCACAGGAACTGCAATGGTTGTCAACTCTATTGCATCTGTAACCTATAAGAAAACAAGAATGGATTACAAAACAGGACCAGAAGCATTGTCTGCAAAACTACGCACAACACTTGTTGGAATTCAAACAGGGTGCGTTGAGGACAAAAAGTCATGGACAGTCCTAGTAGATTGA >Glyma08g06766.2 sequence type=CDS gene model=Glyma08g06766 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCCCCCTTCTATTTTAGGCAACTGCAAGACGGTTCTGAAATGTAATACTGCTGGGGAAAACTATGCTGACATTAATTGGGATGAGCTTGGATTTAGTCTAGTTCCAACAGATTACATGTATGTCATGAAATGTGCAAAGGGAGATAAGTTTTCACAAGGATCCATCCTTCCCTATGGAAACTTAGAGATTAACCCTTCTGCTGGAATCTTAAATTATGGGCAGGGAATCTTTGAGGGGCTAAAGGCACATAGAACTGAGGATGGGTGCATACTTCTATTTCGACCAGATGAGAATGCTCAACGCATGAAGAGAAGTGCAGATAGATTGTGTATGCCATCTCCATCTAATGACCAATTTGTTAATGCTGTAAAGCAGATAGTTCTTGCAAATAAACGCTGGGTGCCTCCTTCAGGAAAAGGGTCCCTATATATTAGGCCATTGCTCATGGGAACTGGAGCATTGTTAGGTTTGGCACCAGCACCAGACTATACATTTCTTATTTATTGTTCTCCAATTGGCAGCTACCACAAGGATAAAAAAAGACTAATTTCATCTTTGTTAATTATTACAGGTGCACTAAACTTGAAAGTTGAGGATAAACTATATAAAGCAATATCTGGCAGTGGAGGAACCGGAGGAATCAAAAGTGTCACCAATTATGCCCCTGTTTATACTGCAATAACTGATGCAAAGGCCAACGGATTCTCCGATGTGTTGTTCTTGGACTCAGCAACTGGAAAATATATAGAGGAGGCCTCAGCATGCAATGTATTTGTTGTGAAGGTATACCCCGACTATTAA
>Glyma08g06766.1 sequence type=predicted peptide gene model=Glyma08g06766 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSPPSILGNCKTVLKCNTAGENYADINWDELGFSLVPTDYMYVMKCAKGDKFSQGSILPYGNLEINPSAGILNYGQGIFEGLKAHRTEDGCILLFRPDENAQRMKRSADRLCMPSPSNDQFVNAVKQIVLANKRWVPPSGKGSLYIRPLLMGTGALLGLAPAPDYTFLIYCSPIGSYHKDKKRLISSLLIITGALNLKVEDKLYKAISGSGGTGGIKSVTNYAPVYTAITDAKANGFSDVLFLDSATGKYIEEASACNVFVVKGNASFTPAIDGTILPGIMGKSIIEIAIDLGYRVLERAVSVEEMLGADEMFCTGTAMVVNSIASVTYKKTRMDYKTGPEALSAKLRTTLVGIQTGCVEDKKSWTVLVD* >Glyma08g06766.2 sequence type=predicted peptide gene model=Glyma08g06766 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSPPSILGNCKTVLKCNTAGENYADINWDELGFSLVPTDYMYVMKCAKGDKFSQGSILPYGNLEINPSAGILNYGQGIFEGLKAHRTEDGCILLFRPDENAQRMKRSADRLCMPSPSNDQFVNAVKQIVLANKRWVPPSGKGSLYIRPLLMGTGALLGLAPAPDYTFLIYCSPIGSYHKDKKRLISSLLIITGALNLKVEDKLYKAISGSGGTGGIKSVTNYAPVYTAITDAKANGFSDVLFLDSATGKYIEEASACNVFVVKVYPDY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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