SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48380 | AT | Annotation by Michelle Graham. TAIR10: BAK1-interacting receptor-like kinase 1 | chr5:19604584-19606532 REVERSE LENGTH=620 | SoyBase | E_val: 7.00E-132 | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0060548 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cell death | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0033612 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: receptor serine/threonine kinase binding | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF07714 | PFAM | Protein tyrosine kinase | JGI | ISS | |
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_G7JSZ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like-kinase n=1 Tax=Medicago truncatula RepID=G7JSZ5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338E2A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338E2A related cluster n=1 Tax=unknown RepID=UPI0002338E2A | SoyBase | E_val: 0 | ISS |
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Glyma08g06720 not represented in the dataset |
Glyma08g06720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g062700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g06720.1 sequence type=CDS gene model=Glyma08g06720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTACGTGCAGCGAAATGGGTTTCCAAATAAAAAGGAGTATTGTGATCGAGAGATTCTTGTGTGGCTTGTTACTGGGTGTCTTAATGGTAGGTCACGGTACTGACACTGATGTATTCTGTTTAAGTTCCATTAAGGAATCCTTGGAAGACCCGCATGATTACTTTTCCAGTTGGAAGTTCAACGACGTAAACATATGTGTATTTGTTGGTGTTGAATGCTGGCAACATGGGGAGAATAAAGTGCTAAATCTCAACCTCACAAACATGGGTCTGAAGGGTGAGTTTCCACGAGGCCTTAGGGGTTGCTCTTCGTTGGTAGGCTTAGACCTTTCACACAACGAGCTCACAGGACCCATCCCATCTGATATATCCACATTACTCCCTTATGCTACTTCCATTGACCTCTCAAATAACAAGTTTAATGGGGAAATTCCACCAAGTTTGGCTAACTGCAGTTACCTGAATTCTCTTAGACTTGATAACAACATGTTAAGCGGTCATATCCCACAAGAACTTGGGCAGCTTCAAAGGATTAGAAACATTTCTTTTGCCAACAATAATTTATCAGGGCCGTTGCCTTTGTTCCGGGATGGCGTGACTAGTGCTGAAGCTTATGCGAATAATACCCAACTTTGTGGAGGGCCTTTGCCACCCTGCTCAAGCGATGATTTCCCTCAATCATTCAAGGATGGCCTTGTTGTTGGCTATGCTTTTTCGCTGACTTCTTCAATTTTCCTTTATATGTTCCTCTGTAAACCTTGGCATCAGTCAAAGCATAAAAGAAACAACAACCACTGGAATAAGGTTAAAGAAATCGGCAAATATATTTGTTCCATCTCAGGGAGGAAGACACCTTCTGAAGCTGACCCCACACACCAATTTCAAGCTCTGCAGTTGCAGGATAAAGCTATGAAAGAGATCTCTCTAGTAATGGAAAGAATGAAGTCCACGATGAGTTTGACCGAAATCAAAGATGCAACAGACTGCTTTTCATTAGAAAATGCCATTGGGATGGGGAAAATTGGAATAATGTATGAGGGAAGGCTAACTGATGGTTCGAACCTTGCCATTAAGAGGCTTTTTGGTTCTAAACAATTTAAGAAGGAATTTCTTTTGGAAATAAGAATTCTGGGTAAGTACAAACACAAAAATATAGTTCCCCTGCTTGGATTCTGTGTAGAAAGAAATGAGAGGATTCTGGTATACCAACACATGCCAAATGGAAGGCTTTCAAAATGGTTGCATCCTTTAGAAAGTGAAGTTACAAGATTGAATTGGCCTCAGAGGATCAAAATAGCTCTTGGGGTAGCAAGAGGCTTATCCTGGCTCCATTATACCTGCAATTTGCATGTTGTGCATCGTAATATAAGTTCGGAGTGTGTCTTGCTAGACAAGAATTTTGAACCCAAAATATCCAATTTTGGAAAGGCCAAGTTTATGAATCCCAACATTGAGGATGGTGCAAGCACGATATTTTATGCAAGTGATGGGAAGAAGGATGTCTATGATTTTGGTAGTTTGATTTTTGAGCTAATCACAGGGAAAACATTTAACGAGTTGTCGCGTTCATCATACAATGCTACTAACCTGTCTGGCAACCCATCGAATTTTTATGATGCAATTGAGGAATCTCTCATTGGGGAAGGTTTTGAAAATGAGGTCTACACTCTCATCAAAGTTGCATGTAAGTGTGTTAAGCCTTTCCCAGATGAAAGACCAACGATGCTTGAAGTTTATAACTATATGATCGATATATGGGGAGAGCGACATAGAATAAGTGATGGTTCTGACACACTCAACGTATCTAGTTCTTCTACTAGTGTAGATGAAATTGTTGAGCTATAA
>Glyma08g06720.1 sequence type=predicted peptide gene model=Glyma08g06720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCTCSEMGFQIKRSIVIERFLCGLLLGVLMVGHGTDTDVFCLSSIKESLEDPHDYFSSWKFNDVNICVFVGVECWQHGENKVLNLNLTNMGLKGEFPRGLRGCSSLVGLDLSHNELTGPIPSDISTLLPYATSIDLSNNKFNGEIPPSLANCSYLNSLRLDNNMLSGHIPQELGQLQRIRNISFANNNLSGPLPLFRDGVTSAEAYANNTQLCGGPLPPCSSDDFPQSFKDGLVVGYAFSLTSSIFLYMFLCKPWHQSKHKRNNNHWNKVKEIGKYICSISGRKTPSEADPTHQFQALQLQDKAMKEISLVMERMKSTMSLTEIKDATDCFSLENAIGMGKIGIMYEGRLTDGSNLAIKRLFGSKQFKKEFLLEIRILGKYKHKNIVPLLGFCVERNERILVYQHMPNGRLSKWLHPLESEVTRLNWPQRIKIALGVARGLSWLHYTCNLHVVHRNISSECVLLDKNFEPKISNFGKAKFMNPNIEDGASTIFYASDGKKDVYDFGSLIFELITGKTFNELSRSSYNATNLSGNPSNFYDAIEESLIGEGFENEVYTLIKVACKCVKPFPDERPTMLEVYNYMIDIWGERHRISDGSDTLNVSSSSTSVDEIVEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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