Glyma08g06700 - SoyBase

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Report for Sequence Feature Glyma08g06700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4811273
stop:	4815226
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61740	AT	Annotation by Michelle Graham. TAIR10: Sulfite exporter TauE/SafE family protein \| chr1:22798365-22801020 REVERSE LENGTH=458	SoyBase	E_val: 8.00E-158	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR14255	Panther	ATP-DEPENDENT PROTEASE (CEREBLON)	JGI		ISS
PF01925	PFAM	Sulfite exporter TauE/SafE	JGI		ISS
UniRef100_Q9LPY2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T23J18.20 n=2 Tax=Arabidopsis thaliana RepID=Q9LPY2_ARATH	SoyBase	E_val: 6.00E-141	ISS
UniRef100_UPI00023383D4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023383D4 related cluster n=1 Tax=unknown RepID=UPI00023383D4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06700

Paralog	Evidence	Comments
Glyma07g30570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g062600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06700

Limit To All Plant Sequences

>Glyma08g06700.1   sequence type=CDS   gene model=Glyma08g06700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATTCTTCTCAGCCTCACATGTTTGGTTCTCACCTTCATCTCCTTCAATCCTTGTAATGCAGAACAAGCACAAACTATTTCAAATTCCCTCAGCATTGACCATGTCCTCCAGAAAATATATGAATGGGGAAATGGTGCACAAGGGTTGCAAGAGGCACATATTCAAATTTCTGGCCCTATAGTGGTGGCAGGAGTGTTATGTTTCATAGCTTCTTCAATATCTAGTGCTGGTGGAATTGGTGGTGGTGGACTTTTCATACCAATATTAACCATTGTGGCTAGCCTAGACCTCAAAACAGCTTCAAGTTTGTCAGCTTTCATGGTCACAGGAGGGTCAATTGCAAATGTCATGTGCAACCTTCGTGCCACAAATCCTAAACTTGGTGGCAAGTCATTGATTGACTATGACATAGCACTTTTATCAGAACCTTGTATGCTGCTAGGAGTGAGTGTTGGAGTCATATGCAACCTTGTGTTCCCAGAATGGTTGATTACCATGCTATTTGCTGTTTTTCTAACTTGGTCTACCTCAAAGACCTGCAACAGTGGAGTGGTGTTTTGGAAGATTGAGTCAGAGGAGAGAAGGAAAAATGATGGATTTGAAGGGCTAGAAAAAGGACTATTGGAAGATGAGAGTTCTGAAGAAAGGGAAGAGGGAGTTCAGGTAGAGAAAGAAAAAGAAAAGGTGAAAAGTATTGAAGAACAGGTTATGGTTCCTGAAGAAAATATAAGGGTGAGGATTCCTTGGTTGAAATTAGTGGTCTTACTCTTGGTCTGGTTCTCTTTCTTCTCCCTCTATCTTCTTCGTGGAAACAAATATGGACAGAGTATCATTCCAATGGAGCCATGTGGTGTGGGATACTGGATTATTTCATCAGCTCAAGTCCCTCTTGCTTTATTTTTCACTGCTTGGATTGTATATAGAAAAGAAAGCCATCAAGACCAAAATCTCATGCAAGAGGACTCATGCCTATCCTCAAATGGACCATCAAACAAGCTTATTTTTCCAATGATGGCACTGCTAGCAGGGATATTGGGTGGTGTCTTTGGAATTGGTGGTGGAATGCTGATAAGTCCACTTCTTCTACATGTTGGAATAGCTCCCGAGGTCACAGCAGCAACATGTTCTTTCATGGTTTTCTTCTCATCCACCATGTCAGCCTTGCAATACCTATTGTTGGGCATGGATCACATAGAGACTGCCCTCATCTTGGCCCTAATATGTTTTGTTGCATCACTAATTGGGTTATTAGTGGTGCAGAAAGCAATTCAAAGCTATGGAAGACCATCTTTAATAGTATTTTCGGTTAGCATAGTGATGACTTTAAGTATTGTTCTAATGACTAGCTTCGGAGCCATTCGAACTTGGAAAGACTATACATCAGGGAGATACATGGGATTCAAACTACCCTGTTGA

Predicted protein sequences of Glyma08g06700

Limit To All Plant Sequences

>Glyma08g06700.1   sequence type=predicted peptide   gene model=Glyma08g06700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRILLSLTCLVLTFISFNPCNAEQAQTISNSLSIDHVLQKIYEWGNGAQGLQEAHIQISGPIVVAGVLCFIASSISSAGGIGGGGLFIPILTIVASLDLKTASSLSAFMVTGGSIANVMCNLRATNPKLGGKSLIDYDIALLSEPCMLLGVSVGVICNLVFPEWLITMLFAVFLTWSTSKTCNSGVVFWKIESEERRKNDGFEGLEKGLLEDESSEEREEGVQVEKEKEKVKSIEEQVMVPEENIRVRIPWLKLVVLLLVWFSFFSLYLLRGNKYGQSIIPMEPCGVGYWIISSAQVPLALFFTAWIVYRKESHQDQNLMQEDSCLSSNGPSNKLIFPMMALLAGILGGVFGIGGGMLISPLLLHVGIAPEVTAATCSFMVFFSSTMSALQYLLLGMDHIETALILALICFVASLIGLLVVQKAIQSYGRPSLIVFSVSIVMTLSIVLMTSFGAIRTWKDYTSGRYMGFKLPC*

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