Glyma08g06650 - SoyBase

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Report for Sequence Feature Glyma08g06650

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4788600
stop:	4791378
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79660	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr1:29976294-29976575 FORWARD LENGTH=93	SoyBase	E_val: 5.00E-20	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6T4K1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T4K1_SOYBN	SoyBase	E_val: 3.00E-63	ISS
UniRef100_Q9S9M0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T24D18.25 protein n=2 Tax=Arabidopsis thaliana RepID=Q9S9M0_ARATH	SoyBase	E_val: 1.00E-11	ISS

Expression Patterns of Glyma08g06650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06650

Paralog	Evidence	Comments
Glyma07g30640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g062200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g06650

Limit To All Plant Sequences

>Glyma08g06650.2   sequence type=transcript   gene model=Glyma08g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTATCGTTATGGTTACGGATGGTTCCTCTTCTTCCTCTCACATGGCATGACACCAGTAATAATAACACATTCCACTTTCCCATCTCTGGTTTTTACATTACAATACAACCTTAACGCTCTTGTTCACGAAACACGCGCTTTTTCACAACCTTCGAAGTCTTTTTCGCAACCTTCGAAGTCAAAAGATTCAGGCATTCTAGTCCCGAGTAAGTCATTGTAGAAGCCATGGTTCTCGACTCCATTTTGTCGTCTTCTCCTTGTCTGAAGTCACCATCTTTCAGTAGGCAGTTTGCAAGGCATGAACTGGGAAGTTGGTCAACACTCGTCAAGAGACACTGCTTCCTCTTATCTGCTCTTGCTCTACTAACTGTCCTCTGTACCATTTATCTATATTTTGCAGTTACATTCGCAGCCAATGACTCCTGCTCTGGGTTGAGTGGATCTCTGAGAGATTCCTGTCATATGGAGCATGTTATGGATTCTGAAGCCAAGAGTAAACTGAAAGGTCTGAGACATTTATGATTTCCAATTCAAGTTGTGCCGGAGAGTTTTTTTATCTTTTCCTTTAGTATAATATGTACTATTTATCCATACTGTTTATCTTAGTATTTGTGAGCCAAAATGTACAATGTATGTAGAAAGCAATTTCTTGAATGCTCATTTGGGGGCTGCTTTCTGGGGTCTAATATAAGATCAGTGAGCATCCTGTTGATGGTTAATTCAAAACTTCAGATTTCTCATTTGTGAAATACGTTTGGTTCATTTTTAAATATGGACCTTTTCATGAAGGATCATTTTCGTTGTTGCAAACCAGA

Coding sequences of Glyma08g06650

Limit To All Plant Sequences

>Glyma08g06650.1   sequence type=CDS   gene model=Glyma08g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTCGACTCCATTTTGTCGTCTTCTCCTTGTCTGAAGTCACCATCTTTCAGTAGGCAGTTTGCAAGGCATGAACTGGGAAGTTGGTCAACACTCGTCAAGAGACACTGCTTCCTCTTATCTGCTCTTGCTCTACTAACTGTCCTCTGTACCATTTATCTATATTTTGCAGTTACATTCGCAGCCAATGACTCCTGCTCTGGGTTGAGTGGATCTCTGAGAGATTCCTGTCATATGGAGCATGTTATGGATTCTGAAGCCAAGAGTAAACTGAAAGGTCTGAGACATTTATGA

>Glyma08g06650.2   sequence type=CDS   gene model=Glyma08g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTCGACTCCATTTTGTCGTCTTCTCCTTGTCTGAAGTCACCATCTTTCAGTAGGCAGTTTGCAAGGCATGAACTGGGAAGTTGGTCAACACTCGTCAAGAGACACTGCTTCCTCTTATCTGCTCTTGCTCTACTAACTGTCCTCTGTACCATTTATCTATATTTTGCAGTTACATTCGCAGCCAATGACTCCTGCTCTGGGTTGAGTGGATCTCTGAGAGATTCCTGTCATATGGAGCATGTTATGGATTCTGAAGCCAAGAGTAAACTGAAAGGTCTGAGACATTTATGA

Predicted protein sequences of Glyma08g06650

Limit To All Plant Sequences

>Glyma08g06650.1   sequence type=predicted peptide   gene model=Glyma08g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLDSILSSSPCLKSPSFSRQFARHELGSWSTLVKRHCFLLSALALLTVLCTIYLYFAVTFAANDSCSGLSGSLRDSCHMEHVMDSEAKSKLKGLRHL*

>Glyma08g06650.2   sequence type=predicted peptide   gene model=Glyma08g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLDSILSSSPCLKSPSFSRQFARHELGSWSTLVKRHCFLLSALALLTVLCTIYLYFAVTFAANDSCSGLSGSLRDSCHMEHVMDSEAKSKLKGLRHL*

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