Glyma08g06590 - SoyBase

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Report for Sequence Feature Glyma08g06590

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4743592
stop:	4748450
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61680	AT	Annotation by Michelle Graham. TAIR10: terpene synthase 14 \| chr1:22772455-22774687 REVERSE LENGTH=569	SoyBase	E_val: 3.00E-100	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0043693	GO-bp	Annotation by Michelle Graham. GO Biological Process: monoterpene biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0010333	GO-mf	Annotation by Michelle Graham. GO Molecular Function: terpene synthase activity	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
GO:0034007	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-linalool synthase activity	SoyBase	N/A	ISS
PF01397	PFAM	Terpene synthase, N-terminal domain	JGI		ISS
PF03936	PFAM	Terpene synthase family, metal binding domain	JGI		ISS
UniRef100_E5GAH3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: (3S)-linalool/(E)-nerolidol synthase n=1 Tax=Vitis vinifera RepID=E5GAH3_VITVI	SoyBase	E_val: 6.00E-144	ISS
UniRef100_I1KQS2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KQS2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06590

Paralog	Evidence	Comments
Glyma07g30700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g06590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06590

Limit To All Plant Sequences

>Glyma08g06590.2   sequence type=CDS   gene model=Glyma08g06590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAAAATACATTAAGATGTTTGTACATGATTGATGCCGTGCAGCGCCTAAATATTGATTACCACTTCCAAGAGGAAATTGAAGCATTCCTACGGAGGCAATATGTGAATTCTAGTACTATTCCGGGTGGTTATTATGGTAATGATATTCATGAGATTGCACTTTGCTTCAGGCTATTGAGACAACAAGGTTTCTTTGTGCCTGAAGAGGTGTTTGGCAAGTTCACAAACAAGGAGGGAAAGTTCAACCAAAAACTTGGTGAAAATATCAAGGGAATGGTAGACCTATATGAAGCCTCACAGTTAGGCATAATAGGGGAAGACATACTTGCTGAAGCTGGAGAATTTAGTGGCCAAGTCCTAAAGGAAAAGGTGGATTGTATCGATAATCTCGAAGCTATGTTTGTGAAGAGAACCTTAGAGCACCCTTTTCACAAAAGCTTTCCCATGTTTACTGCTAGAAATTTCTTTGGTGATTTCCATGGCACGAATAATACATGGTTAGATTCCTTAAAAGAAGTGAGGAAAGGGTTGAGCTCACAAAAACCAATATCTTTAATCTACATAATAGATGACATTTTCGATGTTTATGGGACACTAGATGAATTAACTATTTTCACAGAAGCTGTTTGCAGATGGGATATTACAGCAATTGAGCAGCTACCAGATTACATGAAGGCATGCTTCAGAGTCCTCTATAATCTCACAAATGAAATCAGCTCCAAGGTCTACCAGAAGCACGGGTGGAACCCCATAGACTCTTTACTAAATGCGAGGAGCTTGCCCAGTGCTGAGGAATACTTAAAGAATGGAATAGTAAGCTCTGGAGTGCATATTGTGATGGTTCATGCTTTCTCTCTTTTGGGGCATGGATTAACCGAGGAAAATGTTCAAATCATAGACAGAAACCCTGTCATCATTTCTTCCCCGGCAACAATTCTTCGACTTTGGGATGACTTGGGAAATGCAGAGGATGTTAATGGTGATGGTAATTATGGGTTGTATATGAAGTGCTACATGAAGGAGCACCCACATGTTTCTATTGAACAGACACGGGAGCATGTCACTCGAATGATTTCGGATGCATGGAAACGACTCAACCAAGAATGTCTCATGAGTCATGACAGATGCAAATCCTTTACCATCATCTTTCACTAA

Predicted protein sequences of Glyma08g06590

Limit To All Plant Sequences

>Glyma08g06590.2   sequence type=predicted peptide   gene model=Glyma08g06590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGENTLRCLYMIDAVQRLNIDYHFQEEIEAFLRRQYVNSSTIPGGYYGNDIHEIALCFRLLRQQGFFVPEEVFGKFTNKEGKFNQKLGENIKGMVDLYEASQLGIIGEDILAEAGEFSGQVLKEKVDCIDNLEAMFVKRTLEHPFHKSFPMFTARNFFGDFHGTNNTWLDSLKEVRKGLSSQKPISLIYIIDDIFDVYGTLDELTIFTEAVCRWDITAIEQLPDYMKACFRVLYNLTNEISSKVYQKHGWNPIDSLLNARSLPSAEEYLKNGIVSSGVHIVMVHAFSLLGHGLTEENVQIIDRNPVIISSPATILRLWDDLGNAEDVNGDGNYGLYMKCYMKEHPHVSIEQTREHVTRMISDAWKRLNQECLMSHDRCKSFTIIFH*

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