Report for Sequence Feature Glyma08g06575
Feature Type: gene_model
Chromosome: Gm08
Start: 4725320
stop: 4729320
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g06575
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G20640 AT
Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:7210654-7213199 REVERSE LENGTH=454
SoyBase E_val: 7.00E-56 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
UniRef100_B9RXX2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RXX2_RICCO
SoyBase E_val: 5.00E-125 ISS
UniRef100_UPI0002338CD3 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338CD3 related cluster n=1 Tax=unknown RepID=UPI0002338CD3
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g06575
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g06575
Paralog Evidence Comments
Glyma07g30745 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g06575 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g061300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g06575
Coding sequences of Glyma08g06575
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g06575.1 sequence type=CDS gene model=Glyma08g06575 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGAGGAGTTTCAAGCTAGGATTTGTGGTGAAAACTTGTGGAGTAGTACTACTATTGATTCAACAAGAAGTAGTGTGTTGTTCCCTCTGAGTTCATCATCATCATCATCTATATCTTCTTCTCCTTGTTCTGTGGCAGCTAATAATAATGATGCAGGAAACTATAGCACTAGGGGAACTAGTGACACGGATTTGAAGGCAACAAAATGTTGTGCTGAAGACACTAATGGCAACAATTTGGTTTCTGACACTACTTACCTGGGTTTCGTTGATTTACAGAAGCCACATAATAAGAGTGAATCAGCAGCCAGTGGAAGTGGTGGCATGTTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTCACATCTTCAACATCATCTTCAGAGAATTGGAATCAGCCTCTGTTATTTCGATGTAACGGAAGGGCAGAGAGCAATTTCCACTCCTTGATTCAGGAAGAAACGGGAATGGATTCTTCTAATTCACAAATCCATAGGGATTGGATCCCAAAGAGCTTCTCCTCTGGCGGTGGAAACCAACAAATTGATTATAATAATTTCAAGCCATTATTATTGAACAAACAAGAATTTTCATTAGATCACCATAGTCTAAGTTCTTTAACCACTACTGGGTTATCATCAAACCATGGATTCCCAATTGGATCAGCCTCATCATATGGTAACCCTTCAACGTTGCAAAGCCTATATGACCCTAATTATAATCCTCATCCACAGCATAACTCACTTTTCACCAACCGTCCCATGTTCTATTCATCAAAAGCATGTTATGGGACACCCTGCACCGAACTACCACAAACATGGTCTAAAGTCTCCACTTTTTTGAAGCCCACGACCACAACAATTGCAAAGCAACAACACCCTAATATTGGACTTCACTTTTCTAACAACACTCCTTTCTGGAATGCTTCCGCCGAGGCACTTCACGACATAAGAGTTGGTACGTTTGCTTCATCACAATCACAATATCATAGGCCAACCTTCGATGGAGAGAAACCCAATTGCCCAAGTACTCTATTAAACAAGTTCAATAGTGAAAAAACTCTAGAGTCGGCATCAATGATGACTAAGAAAAATGTTTGTGAACCAGCATTAAAGAGGCCAAGAATTGAAACTTCATCTCCATTGCCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACAGCATCCGTTCTTCACGAAGCCATCGAATACATTAAGTTCCTTCATGATCAAGTCAATGTTTTGAGTACTTCATATATGAAAAATGGAGCTCCCATTCAACATCAGCAGGGCTGTGATGATCTGAAAGACTCAGAAGGACCACAACAAGATTTGAAAAGCAAAGGGCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTGGCAACAGAAGCCACTAGTGCTGAATTGTGGACGCCTACATTCAGATCAGGCGCACTCTTGCGGTAG
Predicted protein sequences of Glyma08g06575
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g06575.1 sequence type=predicted peptide gene model=Glyma08g06575 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEEFQARICGENLWSSTTIDSTRSSVLFPLSSSSSSSISSSPCSVAANNNDAGNYSTRGTSDTDLKATKCCAEDTNGNNLVSDTTYLGFVDLQKPHNKSESAASGSGGMLIDSTLQMMGFGLTSSTSSSENWNQPLLFRCNGRAESNFHSLIQEETGMDSSNSQIHRDWIPKSFSSGGGNQQIDYNNFKPLLLNKQEFSLDHHSLSSLTTTGLSSNHGFPIGSASSYGNPSTLQSLYDPNYNPHPQHNSLFTNRPMFYSSKACYGTPCTELPQTWSKVSTFLKPTTTTIAKQQHPNIGLHFSNNTPFWNASAEALHDIRVGTFASSQSQYHRPTFDGEKPNCPSTLLNKFNSEKTLESASMMTKKNVCEPALKRPRIETSSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKNGAPIQHQQGCDDLKDSEGPQQDLKSKGLCLVPISSTFPVATEATSAELWTPTFRSGALLR*