Glyma08g06570 - SoyBase

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Report for Sequence Feature Glyma08g06570

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4712430
stop:	4715743
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54500	AT	Annotation by Michelle Graham. TAIR10: flavodoxin-like quinone reductase 1 \| chr5:22124674-22126256 FORWARD LENGTH=204	SoyBase	E_val: 1.00E-127	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0010181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FMN binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016655	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	SoyBase	N/A	ISS
KOG3135	KOG	1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein	JGI		ISS
PF03358	PFAM	NADPH-dependent FMN reductase	JGI		ISS
UniRef100_B9RXX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Flavoprotein wrbA, putative n=1 Tax=Ricinus communis RepID=B9RXX3_RICCO	SoyBase	E_val: 7.00E-132	ISS
UniRef100_C6SV84	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SV84_SOYBN	SoyBase	E_val: 4.00E-143	ISS

Expression Patterns of Glyma08g06570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g06570 not represented in the dataset	Glyma08g06570 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06570

Paralog	Evidence	Comments
Glyma07g30750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g061200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g06570

Limit To All Plant Sequences

>Glyma08g06570.2   sequence type=transcript   gene model=Glyma08g06570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAGAATGAGTTACAAAATCACTTTTCTAGCCAAGTTATATATGCTCCACAATCCATTAGAACTTGGAACAATCTGGGAATTTTCAATATGTATTATTTATGATGTGCTTATTCATACAGGTACCTGAAACACTTTCTGAAGAGGTCCTTGGGAAGATGGGTGCACCTCCAAAGAGTGATGTACCGATTATTACACCCAACGAGCTACCTGAGGCTGATGGCTTATTGCTTGGTTTCCCCACAAGATTTGGACTGATGGCTGCTCAATTCAAAGCTTTCATGGATGCAACTGGAGGCCTGTGGCGCACACAGGCACTAGCTGGAAAGCCTGCAGGAATCTTTTACAGCACTGGTTCTCAAGGAGGTGGACAAGAGACTACTCCGTTGACATCTATTACTCAGCTTGTTCACCATGGGATGATTTTTGTGCCCATTGGTTACACATTTGGTGCTGGGATGTTTGAGATGGAGAATGTGAAGGGTGGATCCCCTTATGGTGCAGGTACCTATGCCGGGGATGGTTCCAGACAACCAACTGAGTTAGAATTGGCTCAAGCTTTTCATCAAGGGAAGTACTTTGCTGGCATTGCTAAGAAGCTTAAGGGATCATCTCAGTGAGATCTCTATACATCTACCATTTCATGTTTCTATATACTTAAGCAAGCAAAAGAGTTATGTGCGTCATATGTCCAGTTTCCAGTTCATAATTTCCAACAGAATAAGATGTTAATTAGAGAGAGAGAATGAGAGAGAGAGAGAAAGTAATCAACACTTGGGTTCAATACTATTGTGTTGTCATTTGTCATAATGATGTATCCTCAAAATACAATGTTATTGTCAATAACAAGAATTTGTCAATTGTTACTATTTTCATTGAGATCAAAGTGTTTGTTATAATATTGGTAGGGCGGTGCTAATCAATGACGATG

Coding sequences of Glyma08g06570

Limit To All Plant Sequences

>Glyma08g06570.1   sequence type=CDS   gene model=Glyma08g06570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCACTAAAGTTTACATTGTTTACTATTCTACGTACGGACATGTTGAGAAGTTAGCTGAAGAGATTAAAAAGGGAGCTGGTTCCGTTGAAGGTGTGGAAGCAAAGCTATGGCAGGTACCTGAAACACTTTCTGAAGAGGTCCTTGGGAAGATGGGTGCACCTCCAAAGAGTGATGTACCGATTATTACACCCAACGAGCTACCTGAGGCTGATGGCTTATTGCTTGGTTTCCCCACAAGATTTGGACTGATGGCTGCTCAATTCAAAGCTTTCATGGATGCAACTGGAGGCCTGTGGCGCACACAGGCACTAGCTGGAAAGCCTGCAGGAATCTTTTACAGCACTGGTTCTCAAGGAGGTGGACAAGAGACTACTCCGTTGACATCTATTACTCAGCTTGTTCACCATGGGATGATTTTTGTGCCCATTGGTTACACATTTGGTGCTGGGATGTTTGAGATGGAGAATGTGAAGGGTGGATCCCCTTATGGTGCAGGTACCTATGCCGGGGATGGTTCCAGACAACCAACTGAGTTAGAATTGGCTCAAGCTTTTCATCAAGGGAAGTACTTTGCTGGCATTGCTAAGAAGCTTAAGGGATCATCTCAGTGA

>Glyma08g06570.2   sequence type=CDS   gene model=Glyma08g06570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTGCTTATTCATACAGGTACCTGAAACACTTTCTGAAGAGGTCCTTGGGAAGATGGGTGCACCTCCAAAGAGTGATGTACCGATTATTACACCCAACGAGCTACCTGAGGCTGATGGCTTATTGCTTGGTTTCCCCACAAGATTTGGACTGATGGCTGCTCAATTCAAAGCTTTCATGGATGCAACTGGAGGCCTGTGGCGCACACAGGCACTAGCTGGAAAGCCTGCAGGAATCTTTTACAGCACTGGTTCTCAAGGAGGTGGACAAGAGACTACTCCGTTGACATCTATTACTCAGCTTGTTCACCATGGGATGATTTTTGTGCCCATTGGTTACACATTTGGTGCTGGGATGTTTGAGATGGAGAATGTGAAGGGTGGATCCCCTTATGGTGCAGGTACCTATGCCGGGGATGGTTCCAGACAACCAACTGAGTTAGAATTGGCTCAAGCTTTTCATCAAGGGAAGTACTTTGCTGGCATTGCTAAGAAGCTTAAGGGATCATCTCAGTGA

Predicted protein sequences of Glyma08g06570

Limit To All Plant Sequences

>Glyma08g06570.1   sequence type=predicted peptide   gene model=Glyma08g06570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTKVYIVYYSTYGHVEKLAEEIKKGAGSVEGVEAKLWQVPETLSEEVLGKMGAPPKSDVPIITPNELPEADGLLLGFPTRFGLMAAQFKAFMDATGGLWRTQALAGKPAGIFYSTGSQGGGQETTPLTSITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTYAGDGSRQPTELELAQAFHQGKYFAGIAKKLKGSSQ*

>Glyma08g06570.2   sequence type=predicted peptide   gene model=Glyma08g06570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMCLFIQVPETLSEEVLGKMGAPPKSDVPIITPNELPEADGLLLGFPTRFGLMAAQFKAFMDATGGLWRTQALAGKPAGIFYSTGSQGGGQETTPLTSITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTYAGDGSRQPTELELAQAFHQGKYFAGIAKKLKGSSQ*

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