Glyma08g06560 - SoyBase

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Report for Sequence Feature Glyma08g06560

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4702309
stop:	4704894
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21350	AT	Annotation by Michelle Graham. TAIR10: plant U-box 8 \| chr4:11356143-11357267 REVERSE LENGTH=374	SoyBase	E_val: 4.00E-138	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005871	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: kinesin complex	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0019894	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinesin binding	SoyBase	N/A	ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PTHR23315:SF7	Panther	UNCHARACTERIZED	JGI		ISS
PF04564	PFAM	U-box domain	JGI		ISS
UniRef100_B9RXX4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin ligase PUB14, putative n=1 Tax=Ricinus communis RepID=B9RXX4_RICCO	SoyBase	E_val: 4.00E-147	ISS
UniRef100_I1KQR9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQR9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06560

Paralog	Evidence	Comments
Glyma07g30760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g061100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06560

Limit To All Plant Sequences

>Glyma08g06560.1   sequence type=CDS   gene model=Glyma08g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACCCATCTCCCCGACTACTTCAAGTGTCCAATCTCCCTGGAAATAATGTCGGACCCTGTCATCCTCTCTTCGGGTCACACCTTCGACCGTTCCTCAATTCAACGTTGGCTCGATGCGGGTCACCGAACATGTCCAATTACCAAACTACCCCTTCCCGACCACCCCTCCCTCATCCCCAACCACGCGCTGCGAAGCTTAATCTCCAACTACACATTCCTCTCCCCTCTCCACCAAACAATTTCCCAACCCGAAACCCTAATTTCAACCCTCACTTCCAATTCTTCATCCTCCGATTCCAAAATTGAGGCCCTTAAGCACCTCACGCGCTTATCGATGCGCGATTCGGCGTTCCGCCGGAGGCTGGCGGAGTCCGGTGCCGTCCCCGCCGTTCTCGCCGCCGTGGACGACCCGAGCCTCCAGGAGAAGGCGCTCCCCCTGCTCCTCAACCTCACCCTCGACGACGACTCGAAAGTCGGCCTCGTCGCCGAGGGCGTGGTCGCGCGAGTGGTAGCGGTGCTCCTCCACGCGCCGTCCCCGGACTGCCGCGCCGTCGCGGCGACCATCGTCACGAGCCTCGCGGTCGTGGAGGTGAACAAGGCCACCATCGGCGCGTTCCCGGCGGCGATCGCGGCGCTCGTGGCGATCCTCCGCGACGGGGGCAAGGGGCGGGAGCGGAAGGAGGCTGCCACCGCGCTCTACGCGCTCTGCTCCTTTCCGGACAACCGGAGAAGAGCCGTGAGCTGCGGTGCGGTGCCGATTCTCCTCACAAACGTCGGAATTGGACTCGAACGGTGTGTTGAGGTGATCGGCGTTTTGGCGAAGTGCAAAGAAGGGAGGGAGCAAATGGAATGTTATGACGGTTGTGTTCAGATTCTGGTTAACGTTTTGAGGAACGGAAGCTCGAGGGGGATTCAATATGCGCTCTTTGCACTCACTTCGGTTTGTTCTTATAGCCAAAGAATGGTTATGGTGGCTCTGGAAGAAGGGGGTCTAGAAGCTTCTCTTGGGTTTGTGGAAGATGATAATGAGAAAGTGAGGAGGAATGCATGTAATTTCATTAAGGTTCTGCGTTTCAACCACAGTAGGGTGAGGTGA

Predicted protein sequences of Glyma08g06560

Limit To All Plant Sequences

>Glyma08g06560.1   sequence type=predicted peptide   gene model=Glyma08g06560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATHLPDYFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHPSLIPNHALRSLISNYTFLSPLHQTISQPETLISTLTSNSSSSDSKIEALKHLTRLSMRDSAFRRRLAESGAVPAVLAAVDDPSLQEKALPLLLNLTLDDDSKVGLVAEGVVARVVAVLLHAPSPDCRAVAATIVTSLAVVEVNKATIGAFPAAIAALVAILRDGGKGRERKEAATALYALCSFPDNRRRAVSCGAVPILLTNVGIGLERCVEVIGVLAKCKEGREQMECYDGCVQILVNVLRNGSSRGIQYALFALTSVCSYSQRMVMVALEEGGLEASLGFVEDDNEKVRRNACNFIKVLRFNHSRVR*

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