Report for Sequence Feature Glyma08g06500
Feature Type: gene_model
Chromosome: Gm08
Start: 4667046
stop: 4670775
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g06500
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G17140 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr2:7462820-7465740 FORWARD LENGTH=874
SoyBase E_val: 0 ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF163 Panther
UNKNOWN PROTEIN
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_Q2HTU1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=Q2HTU1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI00023383D0 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023383D0 related cluster n=1 Tax=unknown RepID=UPI00023383D0
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g06500
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma08g06500 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g060600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g06500
Coding sequences of Glyma08g06500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g06500.1 sequence type=CDS gene model=Glyma08g06500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATAAAACGACGAGGAAGCTGATAGACGGCGTTTTGAAGAACACCAACAACCCTAAACTGGCATGGCATCTTGTCAAACGCGTCATCTCTTCCCCTTCCTCTTCATCTTCCTCTTCCACTCAACACCTAGTCACCATCACAACCCGCATCCTCGCCACCGCCAAAATGCACAACGAACTCCACCACCTCCACAATCTCCTCCTATCCTCTCACAACTACCACATTGCACACCCTTCCCTCATTTCCATGGTCCGAGTCCTCGCCCAATTGGGCCACGTCGACGACGCCATTACACACTTCAAGTCCCTCAGAGCCCAATTCCCATCTCTTTCTCCTTCTCTTCCCCTCTACAACCTCCTCCTCCGCTCCACCCTCCGGCACCACCGTCCCGGTTTCGTCTCGTGGCTATACTCCGACATGCTCGCCGCACGTGTCGCCCCTCAGACCTACACCTTCAACCTCCTCATCCATTCTCTCTGCGAGTCGCGCGCTTTCGATCATGCACTCCAACTGTTCGAAAAAATGCCCCAAAAAGGATGCTGCCCCAATGAGTTCACTCTCGGGATCCTCGTTCGCGGCTTGTGCCGCGCTGGCCTCGTTAAACAAGCCTTGGAGCTCGTTAACAATAACAATTCGTGTCGTATTGCTAACAGGGTTGTGTACAACACTCTTGTTTCCAGGTTTTGTAGAGAGGAGATGAATAATGAGGCTGAGAGACTTGTTGAGAGGATGAACGAGCTGGGTGTGTTGCCTGATGTTGTTACGTTTAATTCGAGGATTTCGGCGCTGTGTAGAGCTGGGAAGGTTATGGAAGCGTCTAGGATTTTTAGAGATATGCAGATGGATGCAGAATTGGGACTTCCTAGGCCCAATGTTGTAACTTTTAATTTGATGCTTAAGGGGTTCTGCAAGCATGGGATGATGGGGGATGCAAGGGGTTTGGTTGAGACCATGAAGAAAGTTGGGAATTTTGACTCTTTGGAATGTTATAATATATGGCTGATGGGTTTGCTTAGGAATGGAGAGTTGTTGGAGGCTCGGTTGGTTCTTGATGAAATGGTGGCGAAAGGCATTGAGCCGAATGCTTACACGTATAACATTATGATGGATGGGCTGTGCAGGAACCATATGTTGTCGGATGCAAGAGGATTGATGGATCTGATGATGAGGAATGGGGTTTACCCGGATACAGTTGCTTATAGTACTCTCCTGCATGGATACTGCAGCAGAGGGAAGGTTTTTGAAGCTAAAAGTGTTCTTCATGAAATGATAAGGAATGGTTGTCAGCCTAATACTTACACCTGCAACACATTGCTGCATAGCTTGTGGAAAGAGGGGAGGACCCTAGAGGCAGAGGAAATGTTGCAAAAGATGAATGAAAAATGCTATCAGCCGGATACTGTGACCTGCAATATTGTGGTCAATGGTCTCTGTAGAAATGGAGAATTGGACAAAGCAAGTGAAATTGTAAGTGAGATGTGGACTAATGGACCAACTTCCCTTGATAAAGGAAACTCATTTGCCAGTCTAATTAATTCAATCCACAATGTATCAAACTGCTTGCCTGATGGAATCACATACACAACTTTAATTAATGGACTTTGCAAGGTTGGGAGACTAGAAGAAGCCAAGAAAAAGTTTATCGAGATGTTGGCAAAAAACTTGCGCCCTGATTCTGTGACCTATGATACGTTCATATGGAGTTTTTGTAAACAAGGGAAGATATCATCAGCCTTCCGCGTCTTGAAGGATATGGAGAGAAATGGTTGTAGTAAGACTCTTCAAACTTATAATGCATTGATCCTGGGTTTAGGAAGTAATAACCAAATATTTGAAATATATGGATTGAAGGATGAGATGAAAGAAAAAGGGATAAGTCCAGATATTTGCACTTATAACAATATTATCACTTGCCTCTGTGAAGGAGGAAAGGCAAAGGATGCCATTTCTCTTTTACATGAAATGTTGGATAAAGGTATATCTCCCAATGTATCCTCCTTCAAAATATTGATTAAAGCTTTCAGCAAGTCTAGTGATTTTAAAGTAGCTTGTGAACTATTTGAGGTTGCTTTGAATATATGTGGCCGCAAAGAAGCGTTGTACAGTTTGATGTTCAATGAATTACTTGCTGGGGGACAACTCTCTGAAGCGAAGGAGCTATTTGAAGTTTCATTAGATAGATATCTTACATTGAAGAATTTCATGTATAAAGATTTGATTGCAAGACTTTGCCAGGATGAAAGGTTGGCAGATGCTAATAGCCTTCTTTATAAATTGATTGATAAGGGATATGGCTTCGATCATGCATCATTCATGCCAGTGATTGATGGCTTAAGTAAAAGAGGAAACAAGCGGCAAGCAGATGAACTAGCAAAAAGAATGATGGAATTGGAATTGGAAGACAGACCTGTTGATAGGACTTATTCAAACAGAAAGAGAGTCATTCCTGGAAAACTACTTAAAGATGGAGGAAGTGACTGGCAGGACATAATTAACAGGGATGCTGGCAGTGGAATTGCACTGAAAACTCTTAAGCGTGTGCAGAAAGGCTGGGGCCAAGGAAGTATATCTAGTTTACAGCCTCAGCAGAATGATTTTCTTGATTACTATGATGGTAGTGGTTAA
Predicted protein sequences of Glyma08g06500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g06500.1 sequence type=predicted peptide gene model=Glyma08g06500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDKTTRKLIDGVLKNTNNPKLAWHLVKRVISSPSSSSSSSTQHLVTITTRILATAKMHNELHHLHNLLLSSHNYHIAHPSLISMVRVLAQLGHVDDAITHFKSLRAQFPSLSPSLPLYNLLLRSTLRHHRPGFVSWLYSDMLAARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVKQALELVNNNNSCRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFKVACELFEVALNICGRKEALYSLMFNELLAGGQLSEAKELFEVSLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMPVIDGLSKRGNKRQADELAKRMMELELEDRPVDRTYSNRKRVIPGKLLKDGGSDWQDIINRDAGSGIALKTLKRVQKGWGQGSISSLQPQQNDFLDYYDGSG*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
