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Report for Sequence Feature Glyma08g06490

Feature Type:gene_model
Chromosome:Gm08
Start:4658670
stop:4663320
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g06490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21390AT Annotation by Michelle Graham. TAIR10: S-locus lectin protein kinase family protein | chr4:11394458-11397474 REVERSE LENGTH=849 SoyBaseE_val: 0ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0048544GO-bp Annotation by Michelle Graham. GO Biological Process: recognition of pollen SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF703Panther JGI ISS
PF00954PFAM S-locus glycoprotein family JGI ISS
PF01453PFAM D-mannose binding lectin JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
PF08276PFAM PAN-like domain JGI ISS
UniRef100_I1KQR4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQR4_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2HTU4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase; S-locus glycoprotein; Curculin-like (Mannose-binding) lectin; Apple-like n=1 Tax=Medicago truncatula RepID=Q2HTU4_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g06490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06490
ParalogEvidenceComments
Glyma07g30791 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g060500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g06490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g06490
>Glyma08g06490.1   sequence type=CDS   gene model=Glyma08g06490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCACCAAACGCCAACATGCAATTCTTCTGCTCCTCTTATTCTTCTGTTCTCACACTTTGTTCTCTCATGCAGCCGATTCCATCACAGAGGACACAGTAATCAGAGACAACGATGGTGGTGACAATTTGGTGTCCAAAGACCTCACCTTTGAAATGGGTTTCTTCGGTTTGGATAATAATAACTCTTCAAGATACGTTGGGATTTGGTACCACGAGATTCCGGTCAAAACATTCATATGGGTTGCAAACAGAGAAAAACCCATCAAAGGAAGAGAAGGTTCGATCCTAATACAAAAAAGCAACGGCAACTTGATTGTTCTCGATGGAGAGAACAACGAGGTGTGGTCAACAAACATGTCAGTTCCAAGGAACAACACAAAGGCTGTTCTTCGTGACGATGGAAACCTCGTTCTCTCAGAACACGACAAGGATGTTTGGCAAAGCTTTGAGGACCCAGTTGATACATTTGTGCCGGGTATGGCACTTCCAGTGAGTGCTGGAACGAACATATTCAGGTCATGGAAATCAGAAACGGATCCTTCACCGGGAAACTACTCAATGAAGGTTGACTCTGAGGGGTCAACGAAACAGATTTTGATTTTGGAGGGAGAGAAGAGAAGAAAGTGGAGAAGTGGTTATTGGGATGGTAGAGTTTTCACTGGTGTCTCCGATGTGACAGGAAGCTCTCTATTTGGCTTTACAGTCATCACAGACACTAAAGGAGAGGAATATTTTACATACAAATGGAATAGCCCTGAAAAAGTGAGGTTTCAGATAACTTGGGATGGGTTTGAGAAGAAGTTCGTGTTGGATGCAGATGGGAAACAATGGAATAGGACACAGTTTGAGCCTTTTGATGACTGTGAGAAGTATAACTTTTGTGGTAGTTTTGCAGTGTGTGATACGGGTAATTCTCCTTTTTGTAGTTGCATGGAAGGGTTTGAGCCAATGCATTGGGAGGAGTGGAATAATAGGAATTGGACAAGGGGGTGTGGGAGGAGGACTCCACTGAAGGCTGAGGCTGAGAGAAGTGCTAATAATAGTTCTTCTGGAGCTGATCGTGAGGTGAGTGTTGGAGAAGATGGTTTCTTGGAGCAAAGGTGTACCAAGTTTCCGGATTTCGCACGGTTGGAGAATTTTGTTGGTGATGCGGATTGTCAGAGGTATTGTCTGCAGAATACTTCTTGTACTGCTTATTCATATACTATTGGAATCGGGTGCATGATTTGGTATGGAGAGTTAGTTGATGTTCAACACTCTCAAAATAATCTTGGAAGTTTACTCCACATCCGTCTTGCCGATGCTGATTTAGGCGATGGGGGGAAAAAGACCAAAATTTGGATAATATTAGCTGTTGTGGTAGGGCTGATCTGCATTGGAATCGTTGTATTGCTGGTATGGAGGTTTAAGAGAAAACCTAAAGTTTCCTCAGCTTCTGGTTTCAACAACAATAGCGAAATACCAGCCTTTGATCTAACGAGGAGTACAGACTTATCAGAAATTTCAGGTGAGTTAGGCTTGGAAGGGAATCAACTAAGTGGAGCAGAACTTCCATTGTTCCATTTTAGCTGCATTCTAGCAGCAACAAACAATTTCTCGGACGAAAATAAGCTTGGACAAGGGGGATTTGGTCCTGTCTACAAGGGGAAAATTCCAGGGGGAGAGGAAGTAGCTGTCAAGAGGCTTTCAAGAAAGTCTAGCCAAGGTTTAGAGGAGTTCAAGAATGAAATGGTGCTCATAGCCAAACTGCAACATAGAAATCTGGTTAGACTATTGGGGTGTTGCATTCAAGGGGAAGAAAAGATACTGGTATATGAGTACTTGCCAAACAAAAGCTTGGACTGCTTTTTATTTGATCCGGTGAAGCAAACACAACTAGATTGGGCAAAACGCTTTGAAATAATCGAGGGCATTGCAAGAGGGCTACTTTATCTGCACCGGGATTCTAGACTTAGAATAATTCATCGTGATTTAAAAGCAAGCAACATTTTGTTGGATGAAAGCATGAATCCAAAAATTTCAGACTTTGGCTTGGCCAGAATATTTGGGGGAAACCAAAATGAAGCCAACACAAACAGAGTGGTTGGTACATATGGTTATATGTCCCCAGAATATGCAATGGAAGGTCTGTTTTCAATCAAATCTGATGTCTATAGTTTTGGTGTATTGCTACTTGAGATTATGAGTGGCCGCAAGAACACAAGCTTTCGTGACACAGATGACTCAAGTCTCATTGGATATGCCTGGCACCTTTGGAGTGAGCAGAGAGTAATGGAGCTTGTTGATCCTTCCCTTGGTGATTCAATTCCTAAGACTAAAGCGTTGAGGTTCATACAAATAGGGATGTTATGCGTGCAAGATTCAGCATCTCGTAGACCAAACATGTCATCTGTGTTGTTGATGCTGGGAAGTGAATCAACAGCTCTACCTTTGCCTAAGCAACCTTTGCTCACTACTTCCATGAGGATACTTGATGATGGAGAATCTTATAGCGAAGGCCTTGATGTGTCAAATGATTTGACAGTTTCAATGGTGACAACAGGGAGATAG
Predicted protein sequences of Glyma08g06490
>Glyma08g06490.1   sequence type=predicted peptide   gene model=Glyma08g06490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTKRQHAILLLLLFFCSHTLFSHAADSITEDTVIRDNDGGDNLVSKDLTFEMGFFGLDNNNSSRYVGIWYHEIPVKTFIWVANREKPIKGREGSILIQKSNGNLIVLDGENNEVWSTNMSVPRNNTKAVLRDDGNLVLSEHDKDVWQSFEDPVDTFVPGMALPVSAGTNIFRSWKSETDPSPGNYSMKVDSEGSTKQILILEGEKRRKWRSGYWDGRVFTGVSDVTGSSLFGFTVITDTKGEEYFTYKWNSPEKVRFQITWDGFEKKFVLDADGKQWNRTQFEPFDDCEKYNFCGSFAVCDTGNSPFCSCMEGFEPMHWEEWNNRNWTRGCGRRTPLKAEAERSANNSSSGADREVSVGEDGFLEQRCTKFPDFARLENFVGDADCQRYCLQNTSCTAYSYTIGIGCMIWYGELVDVQHSQNNLGSLLHIRLADADLGDGGKKTKIWIILAVVVGLICIGIVVLLVWRFKRKPKVSSASGFNNNSEIPAFDLTRSTDLSEISGELGLEGNQLSGAELPLFHFSCILAATNNFSDENKLGQGGFGPVYKGKIPGGEEVAVKRLSRKSSQGLEEFKNEMVLIAKLQHRNLVRLLGCCIQGEEKILVYEYLPNKSLDCFLFDPVKQTQLDWAKRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDESMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMSPEYAMEGLFSIKSDVYSFGVLLLEIMSGRKNTSFRDTDDSSLIGYAWHLWSEQRVMELVDPSLGDSIPKTKALRFIQIGMLCVQDSASRRPNMSSVLLMLGSESTALPLPKQPLLTTSMRILDDGESYSEGLDVSNDLTVSMVTTGR*






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