Glyma08g06481 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g06481

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4650699
stop:	4652877
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06481

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11380	AT	Annotation by Michelle Graham. TAIR10: PLAC8 family protein \| chr1:3832695-3833921 FORWARD LENGTH=254	SoyBase	E_val: 5.00E-54	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04749	PFAM	PLAC8 family	JGI		ISS
UniRef100_C6TD79	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TD79_SOYBN	SoyBase	E_val: 2.00E-75	ISS
UniRef100_Q9LPZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T23J18.4 n=1 Tax=Arabidopsis thaliana RepID=Q9LPZ7_ARATH	SoyBase	E_val: 4.00E-23	ISS

Expression Patterns of Glyma08g06481

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g06481 not represented in the dataset	Glyma08g06481 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06481

Paralog	Evidence	Comments
Glyma07g30800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06481 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g060400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06481

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g06481

Limit To All Plant Sequences

>Glyma08g06481.2   sequence type=transcript   gene model=Glyma08g06481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGCACAACTAGCAACAACAAAAAATCGTTGTTATCTTATACTGTTCTTTTAATAATGATATAAATAACTATTTTTTTCTCTTAATTTCTTTCATTGATTATATTGAAAATCCACAAAGCAAAGCCACCAATGGTGCGTGGAGAGGGAACTTAATTTGATTTGGTGCAATGGGAGATTTGGAGAAGAAGCAAGAGAGGGTGATGGAGGAAGAAGATAAAGAGAGGTTGGTGGAGGGTGTGGCGGTTTTGGACTTTGATATGCTTTGCTCCACTGTGGCTTTGCGAGCTGCACATGGCAAATGGGGGAAGCTGGGAGTTGAAGATAGAGGAAGAAGAAGAAGAGGAGGGTGGTGAGTTTGGTGGTGTTCTGAGGATGTGGGAGGGTGAAGTTCTTGATTGTTTTGATGATCATCGAATAGCTCTCGAATCCACATGTTGTCCTTGCTACCGATTTGGGAAAAACATGAAGAGAGCTGATTTCGGTTCTTGCTACATTCAGGGAGCAATTTATTTTCTTCTTGCTATTGGTGCCTTTCTTAACTTCATTGCCTTTGCTGTCACGAGACGTCACTGTTATCTATACCTGATTGTTGCCTTTGGAGCATATTTAGGATTCTTCCGGACACGTATAAGAAAGAAATTCAACATCATAGTGGGTGTTTTCTGTAATTGTTTATGAGTACTATGTTGTTATCTTTGGTGATTGGTTTTGACTTTTGAGGGGTGTAGGGAAGTGATAGCTCTATGGACGATTGCGTTTACCATTTCGCCTGTCCTTGTTGTACATTATGTCAGGTCATTTTCGAAATCTCCTTCCCTTCTCAATTTAAGTTATCTAGAATTATTTTGATTTTCATTTTTAATAAAAACTAGTATGTGCCCTGAATGTTCTTAATTAACTCTTTTTTAAAAAAAAATAAAAAATCTTACTATGTCACATCATTTAAGAACTTTTTAACAACTTTCTACTTCTAATAGTGCAATTATCTAGAACTTGAAATGAATATTACATATTATTTCACAAAATGTTTTTTTACTCACAAGATTTGGTTGCTAGTATAAGAACATGTTCTTCGAGCTGGAGGCCATGTAATTCTCCTCCAATACTGATCCTGAATAAAAACCAATTCTTAAACTTAAAAAACTCACAAAACTTGCATTGGATATGCTCAAAAGATATTAAAATACGCATAAAATTAATAATAGCCATAACCAAAGTATAGTAAAATGACATTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTACCCGGGTGCTCTAACCAACTGAGCTATGAAAGCTTTTCTTGATGGTTTAATCAAAAAATTAAAAATAAACTAAATTATAACTTGCAAATTTTAGAAATATTAAAAAGCATTAAAAGATACTATGAAGTTTGATTTGAGCGTTTTCTTTTTTTATTTAAAAAAAAAAAATAATAATGAAATTACATTTTCTTAAACTTTAG

Coding sequences of Glyma08g06481

Limit To All Plant Sequences

>Glyma08g06481.1   sequence type=CDS   gene model=Glyma08g06481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATGGGGGAAGCTGGGAGTTGAAGATAGAGGAAGAAGAAGAAGAGGAGGGTGGTGAGTTTGGTGGTGTTCTGAGGATGTGGGAGGGTGAAGTTCTTGATTGTTTTGATGATCATCGAATAGCTCTCGAATCCACATGTTGTCCTTGCTACCGATTTGGGAAAAACATGAAGAGAGCTGATTTCGGTTCTTGCTACATTCAGGGAGCAATTTATTTTCTTCTTGCTATTGGTGCCTTTCTTAACTTCATTGCCTTTGCTGTCACGAGACGTCACTGTTATCTATACCTGATTGTTGCCTTTGGAGCATATTTAGGATTCTTCCGGACACGTATAAGAAAGAAATTCAACATCATAGGAAGTGATAGCTCTATGGACGATTGCGTTTACCATTTCGCCTGTCCTTGTTGTACATTATGTCAGGTCATTTTCGAAATCTCCTTCCCTTCTCAATTTAAGTTATCTAGAATTATTTTGATTTTCATTTTTAATAAAAACTAG

>Glyma08g06481.2   sequence type=CDS   gene model=Glyma08g06481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATGGGGGAAGCTGGGAGTTGAAGATAGAGGAAGAAGAAGAAGAGGAGGGTGGTGAGTTTGGTGGTGTTCTGAGGATGTGGGAGGGTGAAGTTCTTGATTGTTTTGATGATCATCGAATAGCTCTCGAATCCACATGTTGTCCTTGCTACCGATTTGGGAAAAACATGAAGAGAGCTGATTTCGGTTCTTGCTACATTCAGGGAGCAATTTATTTTCTTCTTGCTATTGGTGCCTTTCTTAACTTCATTGCCTTTGCTGTCACGAGACGTCACTGTTATCTATACCTGATTGTTGCCTTTGGAGCATATTTAGGATTCTTCCGGACACGTATAAGAAAGAAATTCAACATCATAGTGGGTGTTTTCTGTAATTGTTTATGA

Predicted protein sequences of Glyma08g06481

Limit To All Plant Sequences

>Glyma08g06481.1   sequence type=predicted peptide   gene model=Glyma08g06481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANGGSWELKIEEEEEEEGGEFGGVLRMWEGEVLDCFDDHRIALESTCCPCYRFGKNMKRADFGSCYIQGAIYFLLAIGAFLNFIAFAVTRRHCYLYLIVAFGAYLGFFRTRIRKKFNIIGSDSSMDDCVYHFACPCCTLCQVIFEISFPSQFKLSRIILIFIFNKN*

>Glyma08g06481.2   sequence type=predicted peptide   gene model=Glyma08g06481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANGGSWELKIEEEEEEEGGEFGGVLRMWEGEVLDCFDDHRIALESTCCPCYRFGKNMKRADFGSCYIQGAIYFLLAIGAFLNFIAFAVTRRHCYLYLIVAFGAYLGFFRTRIRKKFNIIVGVFCNCL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain