Glyma08g06430 - SoyBase

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Report for Sequence Feature Glyma08g06430

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4598149
stop:	4602650
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21450	AT	Annotation by Michelle Graham. TAIR10: PapD-like superfamily protein \| chr4:11426136-11428125 FORWARD LENGTH=295	SoyBase	E_val: 2.00E-121	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
KOG0439	KOG	VAMP-associated protein involved in inositol metabolism	JGI		ISS
PTHR10809	Panther	VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP)	JGI		ISS
PF00635	PFAM	MSP (Major sperm protein) domain	JGI		ISS
UniRef100_I1KQQ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQQ9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HTV7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Major sperm protein n=1 Tax=Medicago truncatula RepID=Q2HTV7_MEDTR	SoyBase	E_val: 8.00E-156	ISS

Expression Patterns of Glyma08g06430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06430

Paralog	Evidence	Comments
Glyma07g30870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g059800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06430

Limit To All Plant Sequences

>Glyma08g06430.1   sequence type=CDS   gene model=Glyma08g06430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTTGCTGACCCCAAGCCTCACTCCGAACCTAAGGTCTGGAATTTCTTCAAGCTTCCGTTCCGCCATTCCGCCACCACCAATACGACGCCGTCTTCCGCTAACCTTCACCATCTTCATCATCATCACCATAACCATCACCACAACCCTAATAATAATCTCCCCCTCGAGGGTTCCACTTCCAACACCTCCAATTCCGTTTCCTCCGTTGCGAGATCGCTTCTCCCGACACGACGTCGTCTCAAGCTCGATCCCTCCAACAAGCTTTACTTCCCTTATGAGCCGGGCAAACAGGTTAGGAGTGCCATCAGGATTAAAAACACCAGTAAATCTAATGTAGCTTTCAAGTTTCAAACAACAGCACCCAAAAGCTGTTTCATGCGTCCTCCTGGGGCTATCCTTGCACCTGGTGAGAGTATCATAGCAACAGTGTTCAAGTTTGTAGAGCAACCAGAAAATAATGAAAAGCCTGAAAAAACTGGACTCAAATTTAAAATCATGAGCTTGAAGGTGAAAGGATTAATTGATTACGTCCCTGAACTGTTTGATGAGCAGAAGGACCAAGTAGCAGTGGAGCAGATTTTGCGAGTTGTTTTTCTAGATCCAGAGCGTCCCTGTCCTGCTTTGGAAAAACTGAACCGACAGCTGGCTGATGCTGATGCTGCCCTTGAGGCACGCAAGAAACCTGCAGAAGATGCAGGTCCTAAAATTATCGGGGAAGGACTTGTCATAGACGAATGGAAAGAGAGGAGGGAAAGATACCTCGCAAAGCAGCAGGGTGAAGTGGCTGTAGATTCTGTATAG

Predicted protein sequences of Glyma08g06430

Limit To All Plant Sequences

>Glyma08g06430.1   sequence type=predicted peptide   gene model=Glyma08g06430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVADPKPHSEPKVWNFFKLPFRHSATTNTTPSSANLHHLHHHHHNHHHNPNNNLPLEGSTSNTSNSVSSVARSLLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSNVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEQPENNEKPEKTGLKFKIMSLKVKGLIDYVPELFDEQKDQVAVEQILRVVFLDPERPCPALEKLNRQLADADAALEARKKPAEDAGPKIIGEGLVIDEWKERRERYLAKQQGEVAVDSV*

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