Report for Sequence Feature Glyma08g06420
Feature Type: gene_model
Chromosome: Gm08
Start: 4585423
stop: 4589327
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g06420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G11260 AT
Annotation by Michelle Graham. TAIR10: sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522
SoyBase E_val: 0 ISS
GO:0009627 GO-bp
Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance
SoyBase N/A ISS
GO:0015749 GO-bp
Annotation by Michelle Graham. GO Biological Process: monosaccharide transport
SoyBase N/A ISS
GO:0031347 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of defense response
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005351 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity
SoyBase N/A ISS
GO:0015144 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity
SoyBase N/A ISS
GO:0015145 GO-mf
Annotation by Michelle Graham. GO Molecular Function: monosaccharide transmembrane transporter activity
SoyBase N/A ISS
KOG0254
KOG
Predicted transporter (major facilitator superfamily)
JGI ISS
PTHR24063 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24063:SF116 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00083 PFAM
Sugar (and other) transporter
JGI ISS
UniRef100_I1KQQ8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQQ8_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q7XA52 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Monosaccharide transporter n=1 Tax=Glycine max RepID=Q7XA52_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g06420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g06420
Paralog Evidence Comments
Glyma07g30880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g06420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g059700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g06420
Coding sequences of Glyma08g06420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g06420.1 sequence type=CDS gene model=Glyma08g06420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTGCGGTAGGAGGTATTAGCAACGGAGGGGGCAAGGAGTACCCTGGAAGCCTCACTCCTTTTGTGACGGTAACATGTATAGTTGCAGCCATGGGTGGGTTAATCTTCGGTTACGATATCGGAATTTCAGGTGGGGTGACATCCATGGATCCGTTTCTGCTCAAGTTTTTCCCGTCGGTGTTCCGGAAGAAGAATTCCGACAAAACGGTGAACCAGTACTGTCAATACGACAGCCAGACACTGACGATGTTCACGTCGTCGCTGTATCTCGCCGCGTTGCTGTCGTCGTTGGTTGCCTCCACCGTCACACGTAGGTTCGGCCGAAAACTCTCCATGCTTTTCGGAGGCTTGCTTTTCCTCGTCGGTGCCCTTATCAACGGTTTTGCCCAACACGTGTGGATGCTCATCGTGGGTCGGATCTTGCTCGGGTTCGGTATCGGGTTTGCCAATCAGTCTGTGCCACTCTACCTATCTGAAATGGCTCCATACAAATATAGAGGAGCATTGAACATTGGCTTTCAATTGTCAATCACAGTTGGTATCCTCGTGGCCAATGTGTTGAACTACTTCTTTGCTAAAATCCATGGTGGCTGGGGATGGAGATTGAGTTTGGGAGGTGCTATGGTCCCTGCCCTTATAATCACAATAGGATCACTAGTCCTTCCGGACACTCCCAATTCCATGATTGAAAGGGGTGATCGTGAAAAGGCCAAGGCTCAGCTTCGGAGAGTTCGCGGCATCGACGATGTGGAAGAAGAGTTCAATGACCTTGTTGCAGCTAGTGAATCCTCCAGAAAAGTGGAGCACCCGTGGAGGAACTTGTTGCAAAGAAAGTACAGACCCCACCTCACCATGGCTGTGCTGATTCCATTCTTCCAGCAACTCACTGGAATCAATGTCATCATGTTTTACGCGCCGGTGTTGTTCAGCTCCATCGGGTTTAAGGATGATTCTGCTCTAATGTCAGCTGTGATCACTGGCGTTGTTAATGTTGTGGCAACTTGCGTCTCAATTTATGGTGTTGACAAGTGGGGTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTTCAAATGGTCATTTGCCAGGCTGTAGTTGCAGCTGCTATAGGAGCAAAGTTTGGAATTGATGGAAACCCTGGTGATTTGCCAAAATGGTATGCAGTTGTTGTGGTTCTCTTCATTTGCATTTACGTATCAGCATTTGCCTGGTCATGGGGTCCCCTAGGTTGGTTGGTGCCTAGTGAGATCTTTCCCTTGGAGATCCGTTCGGCTGCTCAAAGTATAAATGTGTCGGTGAACATGTTTTTCACTTTCTTGATTGCACAAGTCTTCTTGACAATGCTTTGCCACATGAAGTTCGGCTTGTTCATCTTCTTTGCCTTTTTCGTGTTGATCATGACATTCTTCATCTACTTCTTCTTGCCTGAAACCAAGGGCATTCCCATTGAAGAAATGAACCAGGTTTGGAAGGCACACCCCTTCTGGTCCAGATTCGTGGAGAATGATGATTATGGCAATGGTGTTGAGATGGGGAGGGGAACTGCTATCAAAGAAGTGTAG
Predicted protein sequences of Glyma08g06420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g06420.1 sequence type=predicted peptide gene model=Glyma08g06420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPAVGGISNGGGKEYPGSLTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMDPFLLKFFPSVFRKKNSDKTVNQYCQYDSQTLTMFTSSLYLAALLSSLVASTVTRRFGRKLSMLFGGLLFLVGALINGFAQHVWMLIVGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITVGILVANVLNYFFAKIHGGWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGDREKAKAQLRRVRGIDDVEEEFNDLVAASESSRKVEHPWRNLLQRKYRPHLTMAVLIPFFQQLTGINVIMFYAPVLFSSIGFKDDSALMSAVITGVVNVVATCVSIYGVDKWGRRALFLEGGVQMVICQAVVAAAIGAKFGIDGNPGDLPKWYAVVVVLFICIYVSAFAWSWGPLGWLVPSEIFPLEIRSAAQSINVSVNMFFTFLIAQVFLTMLCHMKFGLFIFFAFFVLIMTFFIYFFLPETKGIPIEEMNQVWKAHPFWSRFVENDDYGNGVEMGRGTAIKEV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
