Glyma08g06400 - SoyBase

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Report for Sequence Feature Glyma08g06400

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4559079
stop:	4561622
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61350	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr1:22634099-22635820 FORWARD LENGTH=573	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PTHR23315:SF29	Panther	ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN	JGI		ISS
UniRef100_G7JRW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Importin subunit alpha-2 n=1 Tax=Medicago truncatula RepID=G7JRW0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KQQ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06400

Paralog	Evidence	Comments
Glyma07g30900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g059600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06400

Limit To All Plant Sequences

>Glyma08g06400.1   sequence type=CDS   gene model=Glyma08g06400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGATGAAGAAGCATTCGCCGAAGCTTCGGGTCTCCGGCGAGCGGTGGAGCTAATCTTTTCAGTGCTCTCTCTCTCGTACCCGATTCGCGTCTTCTCCGGAAAATGGCAGCTGATTCGGGCCAAGTTGGAGGAGCTTCACGCCGGCCTAATCGCCGCCGAGAAATGCGACTCCGGCGAGAGCCCGTCCCTCTCGCGGCTGGCTGCGGCGGTGGTGGCCACCGCGACGGAGTGCCACGATCTGTGCCGGCGTTGCGTGGTTTTCTCATACAGCGGAAAGCTTCTGTTGCAGAGCGATTTGGACGTGGCGTTCGCGAAGCTCGATGCACACGCGAAGAAGCTCAACGAGATATACAAGACTGGAATTTTAACTAATGGGTTCGCGTTGGTGGTTTCAAAACCGAGTCTTGCCGCTTCCAAAGAGGACATGAGGTTCTACGTGAGGGACTTAACGACGAGGATGAAGGTTGGGGATTTGGGTATGAAGCGACAAGCGCTGAAGAATCTTCTGGAAGTTGTGGTGGAGGATGAGAAGTACGTGAAGGTGATTGTTGATGTTGGTGACGTGGTTCATTTGTTGGTGGGGTTTTTGGGGTCAAATGAGGTTGAGATTCAGGAGGAGAGTGCTAAGGTTGTTTCTGTTGTTGCGGGGTTTGATTCTTACAAAGGGGTTTTGATTGGCGCGGGTGTAATTGCTCCTTTGGTTAAGGTTTTGGATTGTGGGAGTGTGTTAGGTAAGGTTGCGGCTGCAAGGTGTTTGGTGAAGTTAACTGAGAATTCGGATAATGCTTGGTGTGTTTCTGCTCATGGAGGGGTTAGTGTGTTGTTGAAGATTTGTGGTGGTGATTGTGGTGGTGATTTGGTTGGACCTGCTTGTGGGGTGTTGAGGAATCTCGTTGGTGTCGAGGAGATTAAGAGGTTTATGGTTGATGAGGGTGCTGCGGTAACATTCATTAGGCTTGTGAGGTCTAAGGAGGAATCGATTCAGGTGAATTCGATAGCGTTTATTGTGAGTATTGCATCTGGTGATGAGGTTGTTAGGCAGATGGTGATCAAAGAGGGAGCGATTCACGCTTTGTTGCGCGTTTTGGATCCTAAGTGGTCTTATTCTTGTAAAACAAGGGAGGTGGCAATGAGGGCTATTGAGGATTTGTGTTTTTGCTCACCTAGTTCTGTTGGTGTTTTGATGAGTTATGGCTTTGTGGATCAATTGATATATTATGTTCGAAATGGCGAGGTTTCGATTCAGGAATTGGCATTGAAGGTGGCGTTTAGGTTGTGTGGAACATCGGAGGAGGCCAAGAAAGCAATGGGGGATGCCAGGTTTATGCCGGAGTTTGTTAAGTTTCTCAATGCAAAGTCATTTGAGGTTCGGGAAATGGCGGCGGAGGCACTCTCTGGCATGGTTATGGTGCCTAGAAATAGAAAGAGGTTTGTGCAGGATGATCATAACATAGCCCTTATTCTGCAGTTGCTTGATCCAGAGGAGGGGAATTCAGGTAATAAAAAGTTCTTGATCTCTATATTAATGTCCTTAACTAATTGTACTAGTGGGAGGAAAAAGATTGTTAGTTCAGGATATGCCAAAAACATAGAAAAGCTTGCGGATGCTGAAGTTTCTTCTGATGCCAAGAGACTTGTCAAGAAGCTATCCACAAACCGGTTCCGCAGCATGTTGAGTGGAATCTGGCGCTCGTGA

Predicted protein sequences of Glyma08g06400

Limit To All Plant Sequences

>Glyma08g06400.1   sequence type=predicted peptide   gene model=Glyma08g06400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDEEAFAEASGLRRAVELIFSVLSLSYPIRVFSGKWQLIRAKLEELHAGLIAAEKCDSGESPSLSRLAAAVVATATECHDLCRRCVVFSYSGKLLLQSDLDVAFAKLDAHAKKLNEIYKTGILTNGFALVVSKPSLAASKEDMRFYVRDLTTRMKVGDLGMKRQALKNLLEVVVEDEKYVKVIVDVGDVVHLLVGFLGSNEVEIQEESAKVVSVVAGFDSYKGVLIGAGVIAPLVKVLDCGSVLGKVAAARCLVKLTENSDNAWCVSAHGGVSVLLKICGGDCGGDLVGPACGVLRNLVGVEEIKRFMVDEGAAVTFIRLVRSKEESIQVNSIAFIVSIASGDEVVRQMVIKEGAIHALLRVLDPKWSYSCKTREVAMRAIEDLCFCSPSSVGVLMSYGFVDQLIYYVRNGEVSIQELALKVAFRLCGTSEEAKKAMGDARFMPEFVKFLNAKSFEVREMAAEALSGMVMVPRNRKRFVQDDHNIALILQLLDPEEGNSGNKKFLISILMSLTNCTSGRKKIVSSGYAKNIEKLADAEVSSDAKRLVKKLSTNRFRSMLSGIWRS*

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