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Report for Sequence Feature Glyma08g06390

Feature Type:gene_model
Chromosome:Gm08
Start:4544275
stop:4550234
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g06390
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62980AT Annotation by Michelle Graham. TAIR10: F-box/RNI-like superfamily protein | chr3:23273479-23276181 REVERSE LENGTH=594 SoyBaseE_val: 0ISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009734GO-bp Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010152GO-bp Annotation by Michelle Graham. GO Biological Process: pollen maturation SoyBaseN/AISS
GO:0010311GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root formation SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0042752GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm SoyBaseN/AISS
GO:0048443GO-bp Annotation by Michelle Graham. GO Biological Process: stamen development SoyBaseN/AISS
GO:0000151GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0019005GO-cc Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex SoyBaseN/AISS
GO:0000822GO-mf Annotation by Michelle Graham. GO Molecular Function: inositol hexakisphosphate binding SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0010011GO-mf Annotation by Michelle Graham. GO Molecular Function: auxin binding SoyBaseN/AISS
KOG1947 KOG Leucine rich repeat proteins, some proteins contain F-box JGI ISS
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR23125:SF17Panther GRR1-RELATED, ARATH JGI ISS
UniRef100_G7JRV7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein AUXIN SIGNALING F-BOX n=1 Tax=Medicago truncatula RepID=G7JRV7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KQQ6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQQ6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g06390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06390
ParalogEvidenceComments
Glyma07g30910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06390 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g059500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g06390
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g06390
>Glyma08g06390.1   sequence type=CDS   gene model=Glyma08g06390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGTGTAGGAGAAAGAAGGAGAATCAAAATCCCAACTCCACTTTCCCTGATGAGGTGTTGGAGCGAATTTCAGGGATGTTAAAGTCCCGCAAGGACAAAAGCACGGTTTCTTTGGTTTGCAAAGAGTGGTACAACGCAGAGAGATGGTCAAGGAGGAGTGTGTTCATAGGTAACTGCTACTCTGTGTCTCCTGAGATCTTAACTCGCAGGTTCCCAAACATTAGAAGTGTTACACTGAAAGGGAAGCCTCGTTTCTCTGACTTCAACTTGGTTCCTGCCAATTGGGGTGCTGATATTCATTCATGGCTTGTGGTGTTTGCTGGCAAGTACCCTTGGCTTGAGGAGTTGAGGCTCAAGAGGATGACTGTTACTGATGAGAGCTTGGAGTTTCTGGCTCTCCAATTCCCCAATTTCAAAGCACTTTCCCTTCTCAGTTGTGATGGATTCAGCACTGATGGACTGGCTTCAATTGCCACTAATTGCAAGAATTTAACTGAACTTGACATACAAGAGAATGGTATTGAGGATAAGAGTGGCAATTGGTTGGGTTGTTTCCCAGACAGCTTCACATCATTGGAAGTATTGAACTTTGCCAATCTGCACAACGATGTAAATTTTGATGCACTCGAGAAACTCGTCTGTAGGTGCAAATCATTAAAGACTTTGAAGGTTAACAAAAGTGTGACACTAGAACAGTTACAAAGGCTTCTTGTTCATGTTCCTCAGTTAGGTGAACTTGGTACTGGCTCATTTTCACAAGAGTTGACAGCACAGCAGTGCTCAGATCTTGAAAGTGCGTTCAAAAATTGTAGAAATCTTCACACCCTTTCAGGGTTATGGGTAGCTACAGCACAATATCTCCCAGTTCTGTACTCTGCTTGCACAAATCTAACTTTCTTGAATTTTAGTTATGCTCCTCTTGACAGTGATGGTCTTGCTAAGCTTCTTGTTCACTGTCCTAAGCTTCAGCGCATCTGGGTTGTGGACACTGTTGAAGACAAGGGGCTAGAAGCTGTTGGATCACACTGTCCATTGCTTGAGGAACTGCGTGTTTTTCCTGCAGATCCCTTTGATGAGGGCATTGTTCATGGGGTTACTGAATCAGGGTTTATTGCAGTCTCTCAAGGATGTCCAAGACTTCACTATGTTCTATACTTTTGCCGTCAAATGACCAATGCTGCTGTTGCTACTGTTGTGCAAAACTGTCCTGACTTTACTCATTTCCGACTTTGCATCATGCACCCTGGTCAGCCAGATTACTTGACGCAAGAATCAATGGATGAGGCCTTCGGAGCTGTTGTTAAGACTTGCACTAAACTCCAGAGGCTTGCAGTATCAGGTTATCTGACTGACCTAACTTTTGAGTATATAGGCAAGTATGCAAAAAACTTGGAAACTCTTTCGGTGGCTTTTGCTGGAAGCAGTGATTGGGGCATGCGCTGTGTGCTGGATGGCTGTCCGAAGCTGAGAAAACTCGAGGTAAGGGACTGTCCATTTGGCAATGGGGCTCTTCTGTCAGGCTTGGGCAAGTATGAGTCAATGAGATCGCTGTGGATGTCAGACTGCAATTTGACAATGAACGGCGTTAGATTGTTGGCCAAAGAAATGCCTAGGTTGAATGTTGAAGTCATAAAGGAAGAAACCTATGAGACTCATCAGGCTAAAAAAGTTTACGTTTATCGTTCTGTTGCTGGGCCAAGAAGGGATGCCCCTCCTTTTGTTCTCACTCTCTGA
Predicted protein sequences of Glyma08g06390
>Glyma08g06390.1   sequence type=predicted peptide   gene model=Glyma08g06390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMECRRKKENQNPNSTFPDEVLERISGMLKSRKDKSTVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPANWGADIHSWLVVFAGKYPWLEELRLKRMTVTDESLEFLALQFPNFKALSLLSCDGFSTDGLASIATNCKNLTELDIQENGIEDKSGNWLGCFPDSFTSLEVLNFANLHNDVNFDALEKLVCRCKSLKTLKVNKSVTLEQLQRLLVHVPQLGELGTGSFSQELTAQQCSDLESAFKNCRNLHTLSGLWVATAQYLPVLYSACTNLTFLNFSYAPLDSDGLAKLLVHCPKLQRIWVVDTVEDKGLEAVGSHCPLLEELRVFPADPFDEGIVHGVTESGFIAVSQGCPRLHYVLYFCRQMTNAAVATVVQNCPDFTHFRLCIMHPGQPDYLTQESMDEAFGAVVKTCTKLQRLAVSGYLTDLTFEYIGKYAKNLETLSVAFAGSSDWGMRCVLDGCPKLRKLEVRDCPFGNGALLSGLGKYESMRSLWMSDCNLTMNGVRLLAKEMPRLNVEVIKEETYETHQAKKVYVYRSVAGPRRDAPPFVLTL*






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