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Report for Sequence Feature Glyma08g06383

Feature Type:gene_model
Chromosome:Gm08
Start:4527522
stop:4528422
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g06383
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23750AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr3:8558332-8561263 FORWARD LENGTH=928 SoyBaseE_val: 3.00E-33ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF467Panther SUBFAMILY NOT NAMED JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
UniRef100_G7JAT8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like kinase n=1 Tax=Medicago truncatula RepID=G7JAT8_MEDTR SoyBaseE_val: 2.00E-40ISS
UniRef100_I1MYB3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYB3_SOYBN SoyBaseE_val: 3.00E-61ISS

Expression Patterns of Glyma08g06383
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g06383 not represented in the dataset
Glyma08g06383 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g06383 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g059400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g06383
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g06383
>Glyma08g06383.1   sequence type=CDS   gene model=Glyma08g06383   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCGAAAGCGTGTTCCTTAGCAGCAACAACTTCACCTCCGCCCCCGATGGTTGCTTCCAGGGACTCACCAGCTTACAAACCCTCAGCATGACCGATAGGATCAACCTCGCTCCATGGACGATTCCCGTCGAGTTGAATGATAACAACAACCTTGTCAAACTCGAACTTGGAAACGCAAACCTCATCGGTACCTTGCCTGATGTATTCGACAAGTTCGTGAGTTTGCAGGAGCTTCGTCTCTCTTACAACAACCTCACCGGTGGCTTACCCAAATCCTTCGCTAGATCTGCGATTCAGGATATGTGGCTCAACAATCAGAACGGCTTCGGGTTTTCGGGTACCATTGAGGTGTGGTGTTAA
Predicted protein sequences of Glyma08g06383
>Glyma08g06383.1   sequence type=predicted peptide   gene model=Glyma08g06383   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLESVFLSSNNFTSAPDGCFQGLTSLQTLSMTDRINLAPWTIPVELNDNNNLVKLELGNANLIGTLPDVFDKFVSLQELRLSYNNLTGGLPKSFARSAIQDMWLNNQNGFGFSGTIEVWC*






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