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Report for Sequence Feature Glyma08g06340

Feature Type:gene_model
Chromosome:Gm08
Start:4493970
stop:4495511
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g06340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61340AT Annotation by Michelle Graham. TAIR10: F-box family protein | chr1:22628526-22629741 FORWARD LENGTH=185 SoyBaseE_val: 1.00E-25ISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009961GO-bp Annotation by Michelle Graham. GO Biological Process: response to 1-Aminocyclopropane-1-carboxylic Acid SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B9H220UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9H220_POPTR SoyBaseE_val: 2.00E-34ISS
UniRef100_I1KQQ1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQQ1_SOYBN SoyBaseE_val: 2.00E-108ISS

Expression Patterns of Glyma08g06340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06340
ParalogEvidenceComments
Glyma07g30950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g058900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g06340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g06340
>Glyma08g06340.1   sequence type=CDS   gene model=Glyma08g06340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTAGGGTTTGAGGGTTATAGTTATACAACAACACTTGGAAGGAAAAGGGTTGTGTTATTACACAGTGAAGCTTCTTCTCTCAACTCCAATTCACCGGTGAATTCATTGAAGAGAATGTGTAGCAAGAAATTCACATTTGACTCTGAAAGGTCTCGCCTTGAGGCCCTTCCTCTTGATGTTCTGATAAGGGTGTTGTGTGGTGTCGATCATGAAGATTTGAAGCAACTTGTTCGAGTCTCAAAAACTGTTAGAGAAGCGGCTGAGGTTGCTAGGAGGATGCATTTTGAGTATAGCACTCCAAAGAAGAAAAATTTTGCTATTCCTAAACCGTTTGATATAGAGGGTGCTGGTGGGTTTGAGGAAATTGATACTCCAAAAGCCCCATCGAAGAAAGCTAAGTCAAAGCTGATTGGTAAGAATCTAGCAAGCATCTCAGTGGCATTGTTTGCTTCCCCTAATTAG
Predicted protein sequences of Glyma08g06340
>Glyma08g06340.1   sequence type=predicted peptide   gene model=Glyma08g06340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALGFEGYSYTTTLGRKRVVLLHSEASSLNSNSPVNSLKRMCSKKFTFDSERSRLEALPLDVLIRVLCGVDHEDLKQLVRVSKTVREAAEVARRMHFEYSTPKKKNFAIPKPFDIEGAGGFEEIDTPKAPSKKAKSKLIGKNLASISVALFASPN*






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