Glyma08g06320 - SoyBase

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Report for Sequence Feature Glyma08g06320

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4478490
stop:	4484295
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57580	AT	Annotation by Michelle Graham. TAIR10: Calmodulin-binding protein \| chr5:23314994-23317683 REVERSE LENGTH=647	SoyBase	E_val: 0	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF07887	PFAM	Calmodulin binding protein-like	JGI		ISS
UniRef100_G7JRT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding protein n=1 Tax=Medicago truncatula RepID=G7JRT0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQP9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQP9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06320

Paralog	Evidence	Comments
Glyma07g30990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g058600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g06320

Limit To All Plant Sequences

>Glyma08g06320.3   sequence type=transcript   gene model=Glyma08g06320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATCAATTCTAAACATGAAACCAAACACAGAATGCATGGCGACAACCATGCACGGCGGTTTGGCTGGCTCATAAAAAAGCGAAAGCAAAAGTGGGGCTAACTAACTCGCATCATAACATTTTCCATTTTAGTACTAGTATTTTATTTGCCGCTTATTTATGTTTGTTTAGGTTTCTGTCAACTGAAAATGAACTGTTGAAGCTTACCTGACTGAGAAAACCTACTTAGTCACCTTGTGTGCCGCCGCCGCCGCCGCCACCGTGCTTTTTTCTTTTTTCTCTTTTTCTTTCGCTTTCTCGAGAACCAAACAGGTTTGTGATTGGAACAATGCACGGAAGGGCGCAAGAGAAGCGAGGTTTGGATTTGGCTTCCGCCGAAGAAGGTCAGCCTGATCGGAAACGACCTGCGTTGGCTAGTGTAATTGTTGAGGCCCTGAAGGTGGACAGTCTGCAGAAACTTTGCTCATCACTGGAGCCTATTCTACGCAGAGTTGTTAGTGAAGAAGTTGAGCGTGCTTTGGCAAAACTAGGCCCTGCCAAGCTTAATAATACTGGCAGGTCTTCCCCAAAGTGGATAGAAGGCCCTGATGGCAAAATTTTACAATTGCACTTCAAGACCAGGCTATCCCTTCCCCTCTTTACTGGTGGGAAAGTGGAGGGTGAGCAAGGGACATCCATACATATTGTTTTGATTGATGCAAATACTGGCCATATTGTCACATCAGGGCCAGAGTCATGTGTCAGGCTAGATGTTATTGTACTAGAGGGAGATTTCAATAATGAGGATGATGATAATTGGGATGAAGAAGAGTTTGATAGTCATATTGTGAAAGAGCGGGAAGGAAAAAGGCCTCTTCTAACTGGTGATCTGCAAGTCACACTGAAGGAGGGTTTAGGTACACTTGGTGAGCTTACATTTACAGACAACTCTAGCTGGATAAGGAGTAGGAAGTTTAGATTGGGGCTGAAAGTTGCCTCAGGTTGTTGTGAGGAAATGCGTATCCGTGAAGCCAAATCAGAACCTTTCACAGTTAAGGATCATCGTGGAGAATTATACAAGAAACACTACCCGCCTGCCTTGAATGATGAGGTCTGGAGACTGGAGAAGATTGGTAAGGATGGGTCATTTCACAAAAGGCTAAATAAAGCTGGAATATATACGGTTGAAGACTTCTTAAGATTTGTGGTCAGAGACCCTCAGAGATTGCGGAATATTCTTGGGAGCGGCATGTCAAATAAGATGTGGGATATTCTTGTTGAGCATGCAAAGACTTGTGTTCTCAGTGGAAAACTTTATGTATACTATCCTGATGATGCAAGAAATGTGGGTGTTGTTTTCAATAATATTTATGAATTAAGCGGCTTAATTGCCAACGACCAATATTACTCAGCTGATTCTCTCTCCGAGAATCAGAAGGTTTATGTAGACACGTTGGTGAAGAAGGCATATGATAATTGGATGCATGTTATTGAGTATGATGGGAAGTCTCTGATAAATGACAACGAGGATAAGACTTTGGATACCACTCATCCTCAGGCTCCAATGACTTCCCATGAATATTCAAACTCACTTCAGCAGATATCCATCCCAGCTTTGCCACTTCCATTACATCCTGGCCAGCCTTCAGTGGATTCAGGAGTAGCCGTTGGAGGTTATCATGATGGGACAGCTTCCAGATTCTCCTTGCAACCACATCCTAATCTTAATTCTTCCATTCAGTTTGATGATAATGCATTTCCACTGCAAAACCAGTTGATGAGTGTTTCACACCATACCCAACTTCCAAGAAATGAAAATGGGCGGACTGTTGGTCCTCCACAATCATCCACGCATGGTTTTGAGCCTCTCACCATTTCAAATCCTACTTACAGAGGAGCTGAAGAGTACTTCCCAGAGGAGGAAATTCGTATTAGAAGTAATGAGATGCTAGAAAATAACGATATGCAGCATCTTCTCCGTATTTTTAACATGGGAGGCCAATCACATCCTACCCTTAATGCTCAGGATGATGGGTACCCTAGTTCATCTACATACATTTCTGCAAACCCCATGGGCTACAATTTTGATGATGAACCAAACCGTTCCTCGGGAAAAGCTGTTGTGGGCTGGCTCAAGCTGAAGGCTGCTTTAAGATGGGGTATTTTTATTCGGAAACAGGCTGCTGAGAGACGTGCACAGCTCGTTGAACTGGATGACCCATAGAGATCTTGGGGGGGCATTACTGATATTTAGTGATCTGAACAATAATTTTTCTGGTTATAGTATCCAAGGTTTCTTAGTCTTTCATGACATTCAGAATTGGTGTCATGCTGAAATCTCATAGCACGAGCAAGGATATGAAATCTGGACTGAATTATTTGGTGCAGACTTAACTTAAAGATTCCACTGTGCCTTGATCCATAAACAGTTGTGCATAGACCTCTGTCTGTAGAAGAATATCATTCTGCAACATCTCTTCTTTAACTGCTTTGCTTGTGATGTTTTCCTGCATCCAAGTTGTAAAGACTCGAAGGTTTGCTCGTTTTTAAACTGAAGCATGTTGTTGGAATGCTGCTTAAACTTGGCAAGCTCCAAGTGAAATCACAAGGAGCTAGCTACTAGGATCTTTACAGCATTTACCAGGTTGTATTCAATTCTGTATAGTAAGCTAGCTAGATGATTTTCAACCCAACTGAAGTTTGTTTTATAGTTGCTCTGTGGCATTATAATAAAAGTAGAGGAAATAGATTTCCAAATTAGGAAATTAGCAAAATAGGTTTCCGGTTCAGAA

Coding sequences of Glyma08g06320

Limit To All Plant Sequences

>Glyma08g06320.2   sequence type=CDS   gene model=Glyma08g06320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACGGAAGGGCGCAAGAGAAGCGAGGTTTGGATTTGGCTTCCGCCGAAGAAGGTCAGCCTGATCGGAAACGACCTGCGTTGGCTAGTGTAATTGTTGAGGCCCTGAAGGTGGACAGTCTGCAGAAACTTTGCTCATCACTGGAGCCTATTCTACGCAGAGTTGTTAGTGAAGAAGTTGAGCGTGCTTTGGCAAAACTAGGCCCTGCCAAGCTTAATAATACTGGCAGGTCTTCCCCAAAGTGGATAGAAGGCCCTGATGGCAAAATTTTACAATTGCACTTCAAGACCAGGCTATCCCTTCCCCTCTTTACTGGTGGGAAAGTGGAGGGTGAGCAAGGGACATCCATACATATTGTTTTGATTGATGCAAATACTGGCCATATTGTCACATCAGGGCCAGAGTCATGTGTCAGGCTAGATGTTATTGTACTAGAGGGAGATTTCAATAATGAGGATGATGATAATTGGGATGAAGAAGAGTTTGATAGTCATATTGTGAAAGAGCGGGAAGGAAAAAGGCCTCTTCTAACTGGTGATCTGCAAGTCACACTGAAGGAGGGTTTAGGTACACTTGGTGAGCTTACATTTACAGACAACTCTAGCTGGATAAGGAGTAGGAAGTTTAGATTGGGGCTGAAAGTTGCCTCAGGTTGTTGTGAGGAAATGCGTATCCGTGAAGCCAAATCAGAACCTTTCACAGTTAAGGATCATCGTGGAGAATTATACAAGAAACACTACCCGCCTGCCTTGAATGATGAGGTCTGGAGACTGGAGAAGATTGGTAAGGATGGGTCATTTCACAAAAGGCTAAATAAAGCTGGAATATATACGGTTGAAGACTTCTTAAGATTTGTGGTCAGAGACCCTCAGAGATTGCGGAATATTCTTGGGAGCGGCATGTCAAATAAGATGTGGGATATTCTTGTTGAGCATGCAAAGACTTGTGTTCTCAGTGGAAAACTTTATGTATACTATCCTGATGATGCAAGAAATGTGGGTGTTGTTTTCAATAATATTTATGAATTAAGCGGCTTAATTGCCAACGACCAATATTACTCAGCTGATTCTCTCTCCGAGAATCAGAAGGTTTATGTAGACACGTTGGTGAAGAAGGCATATGATAATTGGATGCATGTTATTGAGTATGATGGGAAGTCTCTGATAAATGACAACGAGGATAAGACTTTGGATACCACTCATCCTCAGGCTCCAATGACTTCCCATGAATATTCAAACTCACTTCAGCAGATATCCATCCCAGCTTTGCCACTTCCATTACATCCTGGCCAGCCTTCAGTGGATTCAGGAGTAGCCGTTGGAGGTTATCATGATGGGACAGCTTCCAGATTCTCCTTGCAACCACATCCTAATCTTAATTCTTCCATTCAGTTTGATGATAATGCATTTCCACTGCAAAACCAGTTGATGAGTGTTTCACACCATACCCAACTTCCAAGAAATGAAAATGGGCGGACTGTTGGTCCTCCACAATCATCCACGCATGGTTTTGAGCCTCTCACCATTTCAAATCCTACTTACAGAGGAGCTGAAGAGTACTTCCCAGAGGAGGAAATTCGTATTAGAAGTAATGAGATGCTAGAAAATAACGATATGCAGCATCTTCTCCGTATTTTTAACATGGGAGGCCAATCACATCCTACCCTTAATGCTCAGGATGATGGGTACCCTAGTTCATCTACATACATTTCTGCAAACCCCATGGGCTACAATTTTGATGATGAACCAAACCGTTCCTCGGGAAAAGCTGTTGTGGGCTGGCTCAAGCTGAAGGCTGCTTTAAGATGGGGTATTTTTATTCGGAAACAGGCTGCTGAGAGACGTGCACAGCTCGTTGAACTGGATGACCCATAG

>Glyma08g06320.3   sequence type=CDS   gene model=Glyma08g06320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACGGAAGGGCGCAAGAGAAGCGAGGTTTGGATTTGGCTTCCGCCGAAGAAGGTCAGCCTGATCGGAAACGACCTGCGTTGGCTAGTGTAATTGTTGAGGCCCTGAAGGTGGACAGTCTGCAGAAACTTTGCTCATCACTGGAGCCTATTCTACGCAGAGTTGTTAGTGAAGAAGTTGAGCGTGCTTTGGCAAAACTAGGCCCTGCCAAGCTTAATAATACTGGCAGGTCTTCCCCAAAGTGGATAGAAGGCCCTGATGGCAAAATTTTACAATTGCACTTCAAGACCAGGCTATCCCTTCCCCTCTTTACTGGTGGGAAAGTGGAGGGTGAGCAAGGGACATCCATACATATTGTTTTGATTGATGCAAATACTGGCCATATTGTCACATCAGGGCCAGAGTCATGTGTCAGGCTAGATGTTATTGTACTAGAGGGAGATTTCAATAATGAGGATGATGATAATTGGGATGAAGAAGAGTTTGATAGTCATATTGTGAAAGAGCGGGAAGGAAAAAGGCCTCTTCTAACTGGTGATCTGCAAGTCACACTGAAGGAGGGTTTAGGTACACTTGGTGAGCTTACATTTACAGACAACTCTAGCTGGATAAGGAGTAGGAAGTTTAGATTGGGGCTGAAAGTTGCCTCAGGTTGTTGTGAGGAAATGCGTATCCGTGAAGCCAAATCAGAACCTTTCACAGTTAAGGATCATCGTGGAGAATTATACAAGAAACACTACCCGCCTGCCTTGAATGATGAGGTCTGGAGACTGGAGAAGATTGGTAAGGATGGGTCATTTCACAAAAGGCTAAATAAAGCTGGAATATATACGGTTGAAGACTTCTTAAGATTTGTGGTCAGAGACCCTCAGAGATTGCGGAATATTCTTGGGAGCGGCATGTCAAATAAGATGTGGGATATTCTTGTTGAGCATGCAAAGACTTGTGTTCTCAGTGGAAAACTTTATGTATACTATCCTGATGATGCAAGAAATGTGGGTGTTGTTTTCAATAATATTTATGAATTAAGCGGCTTAATTGCCAACGACCAATATTACTCAGCTGATTCTCTCTCCGAGAATCAGAAGGTTTATGTAGACACGTTGGTGAAGAAGGCATATGATAATTGGATGCATGTTATTGAGTATGATGGGAAGTCTCTGATAAATGACAACGAGGATAAGACTTTGGATACCACTCATCCTCAGGCTCCAATGACTTCCCATGAATATTCAAACTCACTTCAGCAGATATCCATCCCAGCTTTGCCACTTCCATTACATCCTGGCCAGCCTTCAGTGGATTCAGGAGTAGCCGTTGGAGGTTATCATGATGGGACAGCTTCCAGATTCTCCTTGCAACCACATCCTAATCTTAATTCTTCCATTCAGTTTGATGATAATGCATTTCCACTGCAAAACCAGTTGATGAGTGTTTCACACCATACCCAACTTCCAAGAAATGAAAATGGGCGGACTGTTGGTCCTCCACAATCATCCACGCATGGTTTTGAGCCTCTCACCATTTCAAATCCTACTTACAGAGGAGCTGAAGAGTACTTCCCAGAGGAGGAAATTCGTATTAGAAGTAATGAGATGCTAGAAAATAACGATATGCAGCATCTTCTCCGTATTTTTAACATGGGAGGCCAATCACATCCTACCCTTAATGCTCAGGATGATGGGTACCCTAGTTCATCTACATACATTTCTGCAAACCCCATGGGCTACAATTTTGATGATGAACCAAACCGTTCCTCGGGAAAAGCTGTTGTGGGCTGGCTCAAGCTGAAGGCTGCTTTAAGATGGGGTATTTTTATTCGGAAACAGGCTGCTGAGAGACGTGCACAGCTCGTTGAACTGGATGACCCATAG

Predicted protein sequences of Glyma08g06320

Limit To All Plant Sequences

>Glyma08g06320.2   sequence type=predicted peptide   gene model=Glyma08g06320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHGRAQEKRGLDLASAEEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLNNTGRSSPKWIEGPDGKILQLHFKTRLSLPLFTGGKVEGEQGTSIHIVLIDANTGHIVTSGPESCVRLDVIVLEGDFNNEDDDNWDEEEFDSHIVKEREGKRPLLTGDLQVTLKEGLGTLGELTFTDNSSWIRSRKFRLGLKVASGCCEEMRIREAKSEPFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIYTVEDFLRFVVRDPQRLRNILGSGMSNKMWDILVEHAKTCVLSGKLYVYYPDDARNVGVVFNNIYELSGLIANDQYYSADSLSENQKVYVDTLVKKAYDNWMHVIEYDGKSLINDNEDKTLDTTHPQAPMTSHEYSNSLQQISIPALPLPLHPGQPSVDSGVAVGGYHDGTASRFSLQPHPNLNSSIQFDDNAFPLQNQLMSVSHHTQLPRNENGRTVGPPQSSTHGFEPLTISNPTYRGAEEYFPEEEIRIRSNEMLENNDMQHLLRIFNMGGQSHPTLNAQDDGYPSSSTYISANPMGYNFDDEPNRSSGKAVVGWLKLKAALRWGIFIRKQAAERRAQLVELDDP*

>Glyma08g06320.3   sequence type=predicted peptide   gene model=Glyma08g06320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHGRAQEKRGLDLASAEEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLNNTGRSSPKWIEGPDGKILQLHFKTRLSLPLFTGGKVEGEQGTSIHIVLIDANTGHIVTSGPESCVRLDVIVLEGDFNNEDDDNWDEEEFDSHIVKEREGKRPLLTGDLQVTLKEGLGTLGELTFTDNSSWIRSRKFRLGLKVASGCCEEMRIREAKSEPFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIYTVEDFLRFVVRDPQRLRNILGSGMSNKMWDILVEHAKTCVLSGKLYVYYPDDARNVGVVFNNIYELSGLIANDQYYSADSLSENQKVYVDTLVKKAYDNWMHVIEYDGKSLINDNEDKTLDTTHPQAPMTSHEYSNSLQQISIPALPLPLHPGQPSVDSGVAVGGYHDGTASRFSLQPHPNLNSSIQFDDNAFPLQNQLMSVSHHTQLPRNENGRTVGPPQSSTHGFEPLTISNPTYRGAEEYFPEEEIRIRSNEMLENNDMQHLLRIFNMGGQSHPTLNAQDDGYPSSSTYISANPMGYNFDDEPNRSSGKAVVGWLKLKAALRWGIFIRKQAAERRAQLVELDDP*

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