Glyma08g06300 - SoyBase

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Report for Sequence Feature Glyma08g06300

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4466741
stop:	4470989
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21540	AT	Annotation by Michelle Graham. TAIR10: sphingosine kinase 1 \| chr4:11459609-11462356 FORWARD LENGTH=485	SoyBase	E_val: 0	ISS
GO:0007205	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0004143	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity	SoyBase	N/A	ISS
GO:0008481	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sphinganine kinase activity	SoyBase	N/A	ISS
GO:0017050	GO-mf	Annotation by Michelle Graham. GO Molecular Function: D-erythro-sphingosine kinase activity	SoyBase	N/A	ISS
PTHR12358	Panther	SPHINGOSINE KINASE	JGI		ISS
PTHR12358:SF10	Panther	SPHINGOSINE KINASE-RELATED	JGI		ISS
PF00781	PFAM	Diacylglycerol kinase catalytic domain	JGI		ISS
UniRef100_B9SFA5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sphingosine kinase, putative n=1 Tax=Ricinus communis RepID=B9SFA5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KQP5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQP5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06300

Paralog	Evidence	Comments
Glyma07g31015	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g058400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g06300

Limit To All Plant Sequences

>Glyma08g06300.2   sequence type=transcript   gene model=Glyma08g06300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAATTTATATTTTAGAAATATAAAATTTGTTCGGTGAAGTCGAGAAAGAATAAGAAAATCAATAATAAACTAATCAATCGTGTATTCGTGTTGGCTTAAAAAACAAGGCAAGCAAACTTTATTTGGTTTCCTCCTAACTCAAGTCATTAGCATTCTTCTTTGACTTTTTGGTCTAAAACCGGTTTCTCTTGTCACACCAAATGGACCGACCCGCCGCCATATTTTCCGACACCGTCAACCTCAACGGCACGGTGACGCAGCTGTCTCTGCTCGCCGACGGGAGGCTGTGGTGGCCGGAGGGCGGTCAACGCAATTTGAGCATCGAGAAAGAGGTTCTCGGGTTCACCGGCGACGGTCCCGATATAAGGCTCAAAACAATCGTGGAAACCGAAGATGGATGCTGTGGCGGTGCAAGCAGAGCAAAACTAGTCCGAAACGACGTCGTTTTTCGGCCATCGTCCGAGGAAACGCATAGGCTCTGGTGCCAGAAGCTTGGCGAATTCATCGATTCTCTCGGACGACCCAAGAGGCTTTTTGTTTTTGTTAATCCATTCGGGGGGACGAAATCTGCTGTCATTGTTTTTCGTGATCAAGTCAAGCCTCTGCTTGAAGACGCACAAGTGCAGCTTACAGTCCAAGAAACTAAGCATCAGCTCCACGCAAAGCAAGTTGTTCAGTCATTAGATTTTTCAAAGTACGATGGGATTGTTTGTGTTAGTGGAGATGGGATCTTGGTCGAGGTTGTAAATGGACTGCTTCAGAGGCAGGACTGGGACACTGCAATTAAGATGCCCCTTGGAGTAGTTCCTGCAGGTACGGGAAATGGCATGGCAAAGTCTCTTCTTGATTCAGTTGGTGATCCTTGTACAGTACCCAATGCTGTTCTTGCCATCATACGAGGCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGGGTCTGGTTGCTGATATTGATATCGAGTCTGAAAAGTATAGGTGGATGGGAAGTGCTCGTATTGATTTTTATGCTCTCACTCGAATCTTGCATTTGAGGCATTACATTGGATGTCTTTATTTTGTGCCTGCACCTGGATTTGAAGCTTACGGGGACCCCACTAGTTACCCTGGAAGTTCTAATAACAAAGGCAGCAATAGTGAACTAATTGATGAGGAACCTTTGAAGTTACAAAGGCTAGGCTATCAAGGACCTGAAATTGACCTGGAGAATCAGAGTTGGAGAGTTTTAAATGGACCATTTATTTCTGTCTGGCTTCACAATGTGGCTTGGGGTGCTGAAAACACCAAGGCAGCACCAGATGCAAAGTTCTCAGATGGTTATCTGGACTTGATCATTACGAAGAATTGCCCAAAGTTACCATTGCTGTCGTTGATGTCAGATTTGAATAATGGAGGTCATGTAAAATCACCATATGTCATGTATTTAAAGGTGTGGTCATCACTGTGCCTCAAGTTTAATACTTTTTCCTGCTTTGATTTATTTGCACAAGATATGTTACTTTGTGTATCTTGAAACAAATTATAGGTGAAAGTTTTGGTCTTGGAACCTGGTCCACGCTTGGGGGACCAAGAGAAGGAAGGGATCATAGATGCAGATGGTGAGGTTCTGGCAAGGGGGAAAGGGTCGTACCAATGTGAGCAGAAGGCTTTGATGGCCTATGATAAACTTCAAATAACAGTAGATCAAGGTTTAGCTACTATTTTTTCTCCAATATAAAAACCTTGATTTTTATAACAAAAAAGAAAAAAAAAACAAAAGAAAGAATAATCTTGGTTTAATAATTTTGGAAAAAAGCAACTATCAGTGCAACCTTATTTCAGCCTGGAGAGAAAGAGATGTTAGAGAGGAGAAATGTAAATATAATAAATTGTAAATGATATAAGAGATGTTCATATATCATTGTTTGATAATTTTCATCCTTCATTTTATTTCATCTATTGTTGGTCATTCATTGGATCGAATTAATCCGACAAACTTAACTGTTATTTTGATATATCTATATCAACG

Coding sequences of Glyma08g06300

Limit To All Plant Sequences

>Glyma08g06300.1   sequence type=CDS   gene model=Glyma08g06300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCGACCCGCCGCCATATTTTCCGACACCGTCAACCTCAACGGCACGGTGACGCAGCTGTCTCTGCTCGCCGACGGGAGGCTGTGGTGGCCGGAGGGCGGTCAACGCAATTTGAGCATCGAGAAAGAGGTTCTCGGGTTCACCGGCGACGGTCCCGATATAAGGCTCAAAACAATCGTGGAAACCGAAGATGGATGCTGTGGCGGTGCAAGCAGAGCAAAACTAGTCCGAAACGACGTCGTTTTTCGGCCATCGTCCGAGGAAACGCATAGGCTCTGGTGCCAGAAGCTTGGCGAATTCATCGATTCTCTCGGACGACCCAAGAGGCTTTTTGTTTTTGTTAATCCATTCGGGGGGACGAAATCTGCTGTCATTGTTTTTCGTGATCAAGTCAAGCCTCTGCTTGAAGACGCACAAGTGCAGCTTACAGTCCAAGAAACTAAGCATCAGCTCCACGCAAAGCAAGTTGTTCAGTCATTAGATTTTTCAAAGTACGATGGGATTGTTTGTGTTAGTGGAGATGGGATCTTGGTCGAGGTTGTAAATGGACTGCTTCAGAGGCAGGACTGGGACACTGCAATTAAGATGCCCCTTGGAGTAGTTCCTGCAGGTACGGGAAATGGCATGGCAAAGTCTCTTCTTGATTCAGTTGGTGATCCTTGTACAGTACCCAATGCTGTTCTTGCCATCATACGAGGCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGGGTCTGGTTGCTGATATTGATATCGAGTCTGAAAAGTATAGGTGGATGGGAAGTGCTCGTATTGATTTTTATGCTCTCACTCGAATCTTGCATTTGAGGCATTACATTGGATGTCTTTATTTTGTGCCTGCACCTGGATTTGAAGCTTACGGGGACCCCACTAGTTACCCTGGAAGTTCTAATAACAAAGGCAGCAATAGTGAACTAATTGATGAGGAACCTTTGAAGTTACAAAGGCTAGGCTATCAAGGACCTGAAATTGACCTGGAGAATCAGAGTTGGAGAGTTTTAAATGGACCATTTATTTCTGTCTGGCTTCACAATGTGGCTTGGGGTGCTGAAAACACCAAGGCAGCACCAGATGCAAAGTTCTCAGATGGTTATCTGGACTTGATCATTACGAAGAATTGCCCAAAGTTACCATTGCTGTCGTTGATGTCAGATTTGAATAATGGAGGTCATGTAAAATCACCATATGTCATGTATTTAAAGGTGAAAGTTTTGGTCTTGGAACCTGGTCCACGCTTGGGGGACCAAGAGAAGGAAGGGATCATAGATGCAGATGGTGAGGTTCTGGCAAGGGGGAAAGGGTCGTACCAATGTGAGCAGAAGGCTTTGATGGCCTATGATAAACTTCAAATAACAGTAGATCAAGGTTTAGCTACTATTTTTTCTCCAATATAA

>Glyma08g06300.2   sequence type=CDS   gene model=Glyma08g06300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCGACCCGCCGCCATATTTTCCGACACCGTCAACCTCAACGGCACGGTGACGCAGCTGTCTCTGCTCGCCGACGGGAGGCTGTGGTGGCCGGAGGGCGGTCAACGCAATTTGAGCATCGAGAAAGAGGTTCTCGGGTTCACCGGCGACGGTCCCGATATAAGGCTCAAAACAATCGTGGAAACCGAAGATGGATGCTGTGGCGGTGCAAGCAGAGCAAAACTAGTCCGAAACGACGTCGTTTTTCGGCCATCGTCCGAGGAAACGCATAGGCTCTGGTGCCAGAAGCTTGGCGAATTCATCGATTCTCTCGGACGACCCAAGAGGCTTTTTGTTTTTGTTAATCCATTCGGGGGGACGAAATCTGCTGTCATTGTTTTTCGTGATCAAGTCAAGCCTCTGCTTGAAGACGCACAAGTGCAGCTTACAGTCCAAGAAACTAAGCATCAGCTCCACGCAAAGCAAGTTGTTCAGTCATTAGATTTTTCAAAGTACGATGGGATTGTTTGTGTTAGTGGAGATGGGATCTTGGTCGAGGTTGTAAATGGACTGCTTCAGAGGCAGGACTGGGACACTGCAATTAAGATGCCCCTTGGAGTAGTTCCTGCAGGTACGGGAAATGGCATGGCAAAGTCTCTTCTTGATTCAGTTGGTGATCCTTGTACAGTACCCAATGCTGTTCTTGCCATCATACGAGGCCGTAAGCGAAAACTTGATGTGGCCACCATCACACAAGGGGAGACCAGATTTTTCAGTGTGTTGATGCTTGCATGGGGTCTGGTTGCTGATATTGATATCGAGTCTGAAAAGTATAGGTGGATGGGAAGTGCTCGTATTGATTTTTATGCTCTCACTCGAATCTTGCATTTGAGGCATTACATTGGATGTCTTTATTTTGTGCCTGCACCTGGATTTGAAGCTTACGGGGACCCCACTAGTTACCCTGGAAGTTCTAATAACAAAGGCAGCAATAGTGAACTAATTGATGAGGAACCTTTGAAGTTACAAAGGCTAGGCTATCAAGGACCTGAAATTGACCTGGAGAATCAGAGTTGGAGAGTTTTAAATGGACCATTTATTTCTGTCTGGCTTCACAATGTGGCTTGGGGTGCTGAAAACACCAAGGCAGCACCAGATGCAAAGTTCTCAGATGGTTATCTGGACTTGATCATTACGAAGAATTGCCCAAAGTTACCATTGCTGTCGTTGATGTCAGATTTGAATAATGGAGGTCATGTAAAATCACCATATGTCATGTATTTAAAGGTGTGGTCATCACTGTGCCTCAAGTTTAATACTTTTTCCTGCTTTGATTTATTTGCACAAGATATGTTACTTTGTGTATCTTGA

Predicted protein sequences of Glyma08g06300

Limit To All Plant Sequences

>Glyma08g06300.1   sequence type=predicted peptide   gene model=Glyma08g06300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRPAAIFSDTVNLNGTVTQLSLLADGRLWWPEGGQRNLSIEKEVLGFTGDGPDIRLKTIVETEDGCCGGASRAKLVRNDVVFRPSSEETHRLWCQKLGEFIDSLGRPKRLFVFVNPFGGTKSAVIVFRDQVKPLLEDAQVQLTVQETKHQLHAKQVVQSLDFSKYDGIVCVSGDGILVEVVNGLLQRQDWDTAIKMPLGVVPAGTGNGMAKSLLDSVGDPCTVPNAVLAIIRGRKRKLDVATITQGETRFFSVLMLAWGLVADIDIESEKYRWMGSARIDFYALTRILHLRHYIGCLYFVPAPGFEAYGDPTSYPGSSNNKGSNSELIDEEPLKLQRLGYQGPEIDLENQSWRVLNGPFISVWLHNVAWGAENTKAAPDAKFSDGYLDLIITKNCPKLPLLSLMSDLNNGGHVKSPYVMYLKVKVLVLEPGPRLGDQEKEGIIDADGEVLARGKGSYQCEQKALMAYDKLQITVDQGLATIFSPI*

>Glyma08g06300.2   sequence type=predicted peptide   gene model=Glyma08g06300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRPAAIFSDTVNLNGTVTQLSLLADGRLWWPEGGQRNLSIEKEVLGFTGDGPDIRLKTIVETEDGCCGGASRAKLVRNDVVFRPSSEETHRLWCQKLGEFIDSLGRPKRLFVFVNPFGGTKSAVIVFRDQVKPLLEDAQVQLTVQETKHQLHAKQVVQSLDFSKYDGIVCVSGDGILVEVVNGLLQRQDWDTAIKMPLGVVPAGTGNGMAKSLLDSVGDPCTVPNAVLAIIRGRKRKLDVATITQGETRFFSVLMLAWGLVADIDIESEKYRWMGSARIDFYALTRILHLRHYIGCLYFVPAPGFEAYGDPTSYPGSSNNKGSNSELIDEEPLKLQRLGYQGPEIDLENQSWRVLNGPFISVWLHNVAWGAENTKAAPDAKFSDGYLDLIITKNCPKLPLLSLMSDLNNGGHVKSPYVMYLKVWSSLCLKFNTFSCFDLFAQDMLLCVS*

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