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Report for Sequence Feature Glyma08g06290

Feature Type:gene_model
Chromosome:Gm08
Start:4463937
stop:4466015
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g06290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61290AT Annotation by Michelle Graham. TAIR10: syntaxin of plants 124 | chr1:22605188-22606216 FORWARD LENGTH=303 SoyBaseE_val: 3.00E-178ISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0030133GO-cc Annotation by Michelle Graham. GO Cellular Compartment: transport vesicle SoyBaseN/AISS
GO:0005484GO-mf Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity SoyBaseN/AISS
KOG0810 KOG SNARE protein Syntaxin 1 and related proteins JGI ISS
PTHR19957Panther SYNTAXIN JGI ISS
PTHR19957:SF26Panther SYNTAXIN, ARABIDOPSIS THALIANA JGI ISS
PF00804PFAM Syntaxin JGI ISS
PF05739PFAM SNARE domain JGI ISS
UniRef100_G7ILD5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin-124 n=1 Tax=Medicago truncatula RepID=G7ILD5_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KQP4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQP4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g06290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g06290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g058300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g06290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g06290
>Glyma08g06290.1   sequence type=CDS   gene model=Glyma08g06290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGACCTATTCTCAAACTCATTCAAGAAATACAGCAACCTGAAGCAGCAGGCACACCTCGATGACGTAGAGGCCGGGAAAGAAACCGTGAACCTCGACAAATTCTTCGAGGACGTGGAGAACGTGAAAGAAGAAATGAGAACGGTCGAGAAGCTACACAGAAAACTGCAGGAGGCGAACGAAGAGAGTAAAGTGGTGCACAATGCAAAAACAATGAAGGAGCTCCGGGCGAGGATGGACAAGGACGTGGAGCAGGTCCTTAAGCGCGTGAAAGTAATCAAGGGGAAATTAGAGGCCTTGGAGCGTTCCAACGCCGCCAACAGAAACATCCCTGGCTGCGGTCCGGGTTCCTCGGCGGACAGAACCAGAACCTCGGTTGTTAGTGGATTGGGGAAGAAGCTGAAGGACATGATGGACGATTTCCAAGGTCTGAGAACAAGGATGCAGATGGAGTACAAGGAGACCGTGGAGCGAAGATATTTTACGATAACCGGAGAGAAGCCCGATAAGGAGACTATAGAGAACTTGATATGGAGTGGGGAGAGTGAGAGTTTTCTGCAGAGGGCGATTCAGGAGCAGGGGAAGGGACAAATAATGGACACAATTTCGGAGATTCAGGAGCGGCACGACGCGGTGAAGGAGATTGAAAAGAATTTGATTGAGTTGCACCAAGTGTTCTTGGACATGGCGGCTCTGGTGGAGTCGCAGGGGCAGCAGCTAAATAATATAGAGAGCCACGTGGCGCATGCGAGTTCCTTCGTGAGACGCGGCACGGATCAGCTTCAGGATGCTAGAGAGTATCAGAAGAGTTCGAGGAAGTGGACGTGCTATGCAATCATTCTTGGCCTTGTGCTTCTTCTTGTGCTCTTGTTTCCAATCTTGATTAACCTTTTGCCTCATTTGTTAAGGTGA
Predicted protein sequences of Glyma08g06290
>Glyma08g06290.1   sequence type=predicted peptide   gene model=Glyma08g06290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDLFSNSFKKYSNLKQQAHLDDVEAGKETVNLDKFFEDVENVKEEMRTVEKLHRKLQEANEESKVVHNAKTMKELRARMDKDVEQVLKRVKVIKGKLEALERSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRTRMQMEYKETVERRYFTITGEKPDKETIENLIWSGESESFLQRAIQEQGKGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTDQLQDAREYQKSSRKWTCYAIILGLVLLLVLLFPILINLLPHLLR*






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