Report for Sequence Feature Glyma08g06290
Feature Type: gene_model
Chromosome: Gm08
Start: 4463937
stop: 4466015
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g06290
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G61290 AT
Annotation by Michelle Graham. TAIR10: syntaxin of plants 124 | chr1:22605188-22606216 FORWARD LENGTH=303
SoyBase E_val: 3.00E-178 ISS
GO:0006886 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular protein transport
SoyBase N/A ISS
GO:0009860 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen tube growth
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0030133 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: transport vesicle
SoyBase N/A ISS
GO:0005484 GO-mf
Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity
SoyBase N/A ISS
KOG0810
KOG
SNARE protein Syntaxin 1 and related proteins
JGI ISS
PTHR19957 Panther
SYNTAXIN
JGI ISS
PTHR19957:SF26 Panther
SYNTAXIN, ARABIDOPSIS THALIANA
JGI ISS
PF00804 PFAM
Syntaxin
JGI ISS
PF05739 PFAM
SNARE domain
JGI ISS
UniRef100_G7ILD5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin-124 n=1 Tax=Medicago truncatula RepID=G7ILD5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KQP4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQP4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g06290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma08g06290 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g058300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g06290
Coding sequences of Glyma08g06290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g06290.1 sequence type=CDS gene model=Glyma08g06290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATGACCTATTCTCAAACTCATTCAAGAAATACAGCAACCTGAAGCAGCAGGCACACCTCGATGACGTAGAGGCCGGGAAAGAAACCGTGAACCTCGACAAATTCTTCGAGGACGTGGAGAACGTGAAAGAAGAAATGAGAACGGTCGAGAAGCTACACAGAAAACTGCAGGAGGCGAACGAAGAGAGTAAAGTGGTGCACAATGCAAAAACAATGAAGGAGCTCCGGGCGAGGATGGACAAGGACGTGGAGCAGGTCCTTAAGCGCGTGAAAGTAATCAAGGGGAAATTAGAGGCCTTGGAGCGTTCCAACGCCGCCAACAGAAACATCCCTGGCTGCGGTCCGGGTTCCTCGGCGGACAGAACCAGAACCTCGGTTGTTAGTGGATTGGGGAAGAAGCTGAAGGACATGATGGACGATTTCCAAGGTCTGAGAACAAGGATGCAGATGGAGTACAAGGAGACCGTGGAGCGAAGATATTTTACGATAACCGGAGAGAAGCCCGATAAGGAGACTATAGAGAACTTGATATGGAGTGGGGAGAGTGAGAGTTTTCTGCAGAGGGCGATTCAGGAGCAGGGGAAGGGACAAATAATGGACACAATTTCGGAGATTCAGGAGCGGCACGACGCGGTGAAGGAGATTGAAAAGAATTTGATTGAGTTGCACCAAGTGTTCTTGGACATGGCGGCTCTGGTGGAGTCGCAGGGGCAGCAGCTAAATAATATAGAGAGCCACGTGGCGCATGCGAGTTCCTTCGTGAGACGCGGCACGGATCAGCTTCAGGATGCTAGAGAGTATCAGAAGAGTTCGAGGAAGTGGACGTGCTATGCAATCATTCTTGGCCTTGTGCTTCTTCTTGTGCTCTTGTTTCCAATCTTGATTAACCTTTTGCCTCATTTGTTAAGGTGA
Predicted protein sequences of Glyma08g06290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g06290.1 sequence type=predicted peptide gene model=Glyma08g06290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNDLFSNSFKKYSNLKQQAHLDDVEAGKETVNLDKFFEDVENVKEEMRTVEKLHRKLQEANEESKVVHNAKTMKELRARMDKDVEQVLKRVKVIKGKLEALERSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRTRMQMEYKETVERRYFTITGEKPDKETIENLIWSGESESFLQRAIQEQGKGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTDQLQDAREYQKSSRKWTCYAIILGLVLLLVLLFPILINLLPHLLR*