SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G61290 | AT | Annotation by Michelle Graham. TAIR10: syntaxin of plants 124 | chr1:22605188-22606216 FORWARD LENGTH=303 | SoyBase | E_val: 3.00E-178 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0030133 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: transport vesicle | SoyBase | N/A | ISS |
| GO:0005484 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity | SoyBase | N/A | ISS |
| KOG0810 | KOG | SNARE protein Syntaxin 1 and related proteins | JGI | ISS | |
| PTHR19957 | Panther | SYNTAXIN | JGI | ISS | |
| PTHR19957:SF26 | Panther | SYNTAXIN, ARABIDOPSIS THALIANA | JGI | ISS | |
| PF00804 | PFAM | Syntaxin | JGI | ISS | |
| PF05739 | PFAM | SNARE domain | JGI | ISS | |
| UniRef100_G7ILD5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin-124 n=1 Tax=Medicago truncatula RepID=G7ILD5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KQP4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQP4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g06290 not represented in the dataset |
Glyma08g06290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g058300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g06290.1 sequence type=CDS gene model=Glyma08g06290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGACCTATTCTCAAACTCATTCAAGAAATACAGCAACCTGAAGCAGCAGGCACACCTCGATGACGTAGAGGCCGGGAAAGAAACCGTGAACCTCGACAAATTCTTCGAGGACGTGGAGAACGTGAAAGAAGAAATGAGAACGGTCGAGAAGCTACACAGAAAACTGCAGGAGGCGAACGAAGAGAGTAAAGTGGTGCACAATGCAAAAACAATGAAGGAGCTCCGGGCGAGGATGGACAAGGACGTGGAGCAGGTCCTTAAGCGCGTGAAAGTAATCAAGGGGAAATTAGAGGCCTTGGAGCGTTCCAACGCCGCCAACAGAAACATCCCTGGCTGCGGTCCGGGTTCCTCGGCGGACAGAACCAGAACCTCGGTTGTTAGTGGATTGGGGAAGAAGCTGAAGGACATGATGGACGATTTCCAAGGTCTGAGAACAAGGATGCAGATGGAGTACAAGGAGACCGTGGAGCGAAGATATTTTACGATAACCGGAGAGAAGCCCGATAAGGAGACTATAGAGAACTTGATATGGAGTGGGGAGAGTGAGAGTTTTCTGCAGAGGGCGATTCAGGAGCAGGGGAAGGGACAAATAATGGACACAATTTCGGAGATTCAGGAGCGGCACGACGCGGTGAAGGAGATTGAAAAGAATTTGATTGAGTTGCACCAAGTGTTCTTGGACATGGCGGCTCTGGTGGAGTCGCAGGGGCAGCAGCTAAATAATATAGAGAGCCACGTGGCGCATGCGAGTTCCTTCGTGAGACGCGGCACGGATCAGCTTCAGGATGCTAGAGAGTATCAGAAGAGTTCGAGGAAGTGGACGTGCTATGCAATCATTCTTGGCCTTGTGCTTCTTCTTGTGCTCTTGTTTCCAATCTTGATTAACCTTTTGCCTCATTTGTTAAGGTGA
>Glyma08g06290.1 sequence type=predicted peptide gene model=Glyma08g06290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNDLFSNSFKKYSNLKQQAHLDDVEAGKETVNLDKFFEDVENVKEEMRTVEKLHRKLQEANEESKVVHNAKTMKELRARMDKDVEQVLKRVKVIKGKLEALERSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRTRMQMEYKETVERRYFTITGEKPDKETIENLIWSGESESFLQRAIQEQGKGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTDQLQDAREYQKSSRKWTCYAIILGLVLLLVLLFPILINLLPHLLR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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