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Report for Sequence Feature Glyma08g06270

Feature Type:gene_model
Chromosome:Gm08
Start:4455327
stop:4459659
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g06270
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21585AT Annotation by Michelle Graham. TAIR10: endonuclease 4 | chr4:11477988-11479953 FORWARD LENGTH=299 SoyBaseE_val: 3.00E-147ISS
GO:0006308GO-bp Annotation by Michelle Graham. GO Biological Process: DNA catabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004519GO-mf Annotation by Michelle Graham. GO Molecular Function: endonuclease activity SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PF02265PFAM S1/P1 Nuclease JGI ISS
UniRef100_G7JQT2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nuclease S1 n=1 Tax=Medicago truncatula RepID=G7JQT2_MEDTR SoyBaseE_val: 1.00E-174ISS
UniRef100_I1KQP2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQP2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g06270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g06270 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g058100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g06270
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g06270
>Glyma08g06270.1   sequence type=CDS   gene model=Glyma08g06270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATATGATTATGGGTTATGAGAGAGTGAGAGTGCTGTTTCTTCTGTTTCTGATACCACTGCCAACGGTTCTGGGTTGGGGCAAGGAGGGCCACTATGCCACTTGTAAGATTGCACAGGAGTATCTTAGTGAAGATGCTCTATTTGCGGTCAAACAATTGCTTCCAGATTCTGCTCAAGGTGATCTTGCTGCCGTTTGCTCTTGGGCTGATGAGGTTGGCCATACTCACCGCTATCATTGGAGCAGCGCTTTACATTACGTTGACACACCGGATTTCAAGTGTAACTATGAATACTGCAGAGACTGTCATGATTCTTACAGACATGAACATAGGTGTGTTAGTGGAGCAATATACAACTATACAATGCAACTTAAATCAGCTGATGCAGGCATTTCATCTGAATTTAACTATAACTTGACCGAGGCACTTATGTTCTTGTCACATTTTGTTGGGGATATTCATCAGCCTCTACATGTTGGTTTCACTGGAGATCTGGGTGGAAACACAATAACAGTTCATTGGTACCGAAGGAAAGCAAATCTTCATTATGTGTGGGATGACTTGATTATTCAGTCTGCTCTAAAAACATTCTATGACTCTGATCTTTCTATTATGATACAAGCCATTCAAAGGAATATTACAGATAATTGGCTAAATGATGTATCAACTTGGGAACATTGTGCTCACAACTACACAGCCTGTCCAAATCGGTATGCTTCTGAAAGCATTAGCTTAGCATGCAAATTTGCTTACAGGAATGCTACCCCAGGAAGCACTTTGAAAGATGAGTACTTCCTTTCTCGGCTGCCTGTTGTGGAGAAAAGGCTGGCTCAAGGTGGTGTGCGACTTGCAGCTATCCTTAACCGTATTTTCACTTCTTCCAAGACCAGAATTGCTCAAGCTTGA
Predicted protein sequences of Glyma08g06270
>Glyma08g06270.1   sequence type=predicted peptide   gene model=Glyma08g06270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHMIMGYERVRVLFLLFLIPLPTVLGWGKEGHYATCKIAQEYLSEDALFAVKQLLPDSAQGDLAAVCSWADEVGHTHRYHWSSALHYVDTPDFKCNYEYCRDCHDSYRHEHRCVSGAIYNYTMQLKSADAGISSEFNYNLTEALMFLSHFVGDIHQPLHVGFTGDLGGNTITVHWYRRKANLHYVWDDLIIQSALKTFYDSDLSIMIQAIQRNITDNWLNDVSTWEHCAHNYTACPNRYASESISLACKFAYRNATPGSTLKDEYFLSRLPVVEKRLAQGGVRLAAILNRIFTSSKTRIAQA*






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