SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21585 | AT | Annotation by Michelle Graham. TAIR10: endonuclease 4 | chr4:11477988-11479953 FORWARD LENGTH=299 | SoyBase | E_val: 3.00E-147 | ISS |
| GO:0006308 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA catabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004519 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endonuclease activity | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| PF02265 | PFAM | S1/P1 Nuclease | JGI | ISS | |
| UniRef100_G7JQT2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclease S1 n=1 Tax=Medicago truncatula RepID=G7JQT2_MEDTR | SoyBase | E_val: 1.00E-174 | ISS |
| UniRef100_I1KQP2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQP2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g06270 not represented in the dataset |
Glyma08g06270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g058100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g06270.1 sequence type=CDS gene model=Glyma08g06270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATATGATTATGGGTTATGAGAGAGTGAGAGTGCTGTTTCTTCTGTTTCTGATACCACTGCCAACGGTTCTGGGTTGGGGCAAGGAGGGCCACTATGCCACTTGTAAGATTGCACAGGAGTATCTTAGTGAAGATGCTCTATTTGCGGTCAAACAATTGCTTCCAGATTCTGCTCAAGGTGATCTTGCTGCCGTTTGCTCTTGGGCTGATGAGGTTGGCCATACTCACCGCTATCATTGGAGCAGCGCTTTACATTACGTTGACACACCGGATTTCAAGTGTAACTATGAATACTGCAGAGACTGTCATGATTCTTACAGACATGAACATAGGTGTGTTAGTGGAGCAATATACAACTATACAATGCAACTTAAATCAGCTGATGCAGGCATTTCATCTGAATTTAACTATAACTTGACCGAGGCACTTATGTTCTTGTCACATTTTGTTGGGGATATTCATCAGCCTCTACATGTTGGTTTCACTGGAGATCTGGGTGGAAACACAATAACAGTTCATTGGTACCGAAGGAAAGCAAATCTTCATTATGTGTGGGATGACTTGATTATTCAGTCTGCTCTAAAAACATTCTATGACTCTGATCTTTCTATTATGATACAAGCCATTCAAAGGAATATTACAGATAATTGGCTAAATGATGTATCAACTTGGGAACATTGTGCTCACAACTACACAGCCTGTCCAAATCGGTATGCTTCTGAAAGCATTAGCTTAGCATGCAAATTTGCTTACAGGAATGCTACCCCAGGAAGCACTTTGAAAGATGAGTACTTCCTTTCTCGGCTGCCTGTTGTGGAGAAAAGGCTGGCTCAAGGTGGTGTGCGACTTGCAGCTATCCTTAACCGTATTTTCACTTCTTCCAAGACCAGAATTGCTCAAGCTTGA
>Glyma08g06270.1 sequence type=predicted peptide gene model=Glyma08g06270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHMIMGYERVRVLFLLFLIPLPTVLGWGKEGHYATCKIAQEYLSEDALFAVKQLLPDSAQGDLAAVCSWADEVGHTHRYHWSSALHYVDTPDFKCNYEYCRDCHDSYRHEHRCVSGAIYNYTMQLKSADAGISSEFNYNLTEALMFLSHFVGDIHQPLHVGFTGDLGGNTITVHWYRRKANLHYVWDDLIIQSALKTFYDSDLSIMIQAIQRNITDNWLNDVSTWEHCAHNYTACPNRYASESISLACKFAYRNATPGSTLKDEYFLSRLPVVEKRLAQGGVRLAAILNRIFTSSKTRIAQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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