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Report for Sequence Feature Glyma08g06261

Feature Type:gene_model
Chromosome:Gm08
Start:4448463
stop:4453691
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g06261
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G29990AT Annotation by Michelle Graham. TAIR10: alternative NAD(P)H dehydrogenase 2 | chr2:12793562-12795913 REVERSE LENGTH=508 SoyBaseE_val: 0ISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0031304GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to mitochondrial inner membrane SoyBaseN/AISS
GO:0003954GO-mf Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
KOG2495 KOG NADH-dehydrogenase (ubiquinone) JGI ISS
PTHR22915Panther NADH DEHYDROGENASE-RELATED JGI ISS
PTHR22915:SF4Panther NADH DEHYDROGENASE-RELATED JGI ISS
PF00070PFAM Pyridine nucleotide-disulphide oxidoreductase JGI ISS
PF07992PFAM Pyridine nucleotide-disulphide oxidoreductase JGI ISS
UniRef100_G7JQS9UniRef Annotation by Michelle Graham. Most informative UniRef hit: External NADH-ubiquinone oxidoreductase n=1 Tax=Medicago truncatula RepID=G7JQS9_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002338CC4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338CC4 related cluster n=1 Tax=unknown RepID=UPI0002338CC4 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g06261
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g06261 not represented in the dataset
Glyma08g06261 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06261
ParalogEvidenceComments
Glyma07g31050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06261 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g058000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g06261
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma08g06261
>Glyma08g06261.2   sequence type=transcript   gene model=Glyma08g06261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAGTTATTGAATCTTCGCCTCCAGCAACTTCATTACCAAACCAAAGTAGGCTTAGGAAGTGTAAAGACTTGTTCTCTAACAATGGCATTGGCAAGGATTGCTAGGGCCAACCTGAGAAGATCAGGAGGTGCTTTGGGCAGTTCTGCTCATGAGAAGGATATGTTCAATGTGGGAGGATACACAAGCAGATCCAACATACCTTCCCATAAATTTTTTGAATCAGATCGAAAGTTTTCATATGTTCCAAGAATTAAGGAACAGAACTACATAAACTTTTCAATGAGGGGAATATCAGGAACACCATACGATCACTTTCCTTCTGCTAGCACACAGACTGTTATAGAGGAGTCCGAGTATGAGTTTGAGAGTGATCGGCAAAGATATGCAGGACTACAGCCAACAAAGCCAGGTGAAAAGCCTAGGGTGGTTGTTATTGGTACGGGTTGGGCCGCGTGCCGGTTCCTCAAAGGGATAGACACCAGAATTTATGATGTTGTGTGCATATCACCAAGGAATCACATGGTCTTTACTCCTTTACTAGCTTCAACTTGTGTTGGAACCCTGGAATTCAGAACTGTTGCTGAGCCTGTATCCAGAATACAGGATTCATTAGCAAGGGACCCTAACTCCTACTTCTTTCTAGCTTCTTGCACTGGCATTGACACAGGCAAACATGAAATCTATTGTGAGGCAGTTAACAATGGTGGATTGCCTCAAGAGCCTTACCAATTCAAAGTCGCGTATGACAAGCTTGTAATTGCATCAGGATCTGAGCCTTTAACTTTTGGTATCAAGGGAGTAAAGGAAAATGCTTTTTTTCTTCGCGAAGTGAACCATGCTCAAGAAATAAGGAAGAGACTTCTCCTTAATCTGATGCTTTCTGAAAATCCAGGCATATCGGAAGAAGACAAGAAACGCCTTCTACACTGTGTAGTTATTGGAGGTGGTCCTACCGGAGTGGAATTTAGTGGTGAATTGAGTGATTTCATCATGAGAGATGTTCAGGAGCGCTATACTCATGTCAAAGATTACATTCACGTCACACTCATTGAGGCAAACGAGATACTGTCATCCTTTGATGTTAGCCTACGGCAATATGCAACAAAGCACTTAACAAAGTCCGGGGTCCGTCTTATGCGAGGTGTGGTGAAGGAGGTGCATCCCAAAAAGATAATTCTGAGTGATGGAACAGAGGTTCCTTATGGCCTCTTGGTTTGGTCCACAGGGGTTGGTGCCTCTGAGTTTGTGAAAACACTAGATCTTCCTAAGTCTCAAGGTGGAAGAATTGGTGTAGATGATTGGCTGCGTGTTCCCTCAGTGGAAGATGTATTTGCCCTTGGAGATTGTGCTGGTTTTCTTGAACACACTGGAAGGCCTGTGCTTCCAGCTCTAGCTCAGGTTGCTGAAAGGCAGGGAAAGTTTCTTGTGGAGTTGTTCGACGAAATAGGGAATCAGAATGGAGGCAAGGCTTATTCTGCGAAAGGCATGCCACTTGGAGAACCTTTTGTATATAAGCATCTTGGGAGCATGGCATCAGTAGGTGGCTACAAAGCACTGGTTGATCTACGACAGTCAAAGGATTCAAAGGGATTGTCACTTGCTGGTTTTGTTAGCTGGATGATATGGCGCTCTGCATATCTGACACGTGTCCTTAGCTGGAGGAACAGGTTTTACGTGGCAGTCAACTGGGCCACCACATTAGTCTTCGGTAGAGACAACAGCAGGATAGGTTGAAATTTCATTCATTAAAGAAACAGCAAAACCAGTCAAATATTTTTCTTGGTAGAGTTCCTGATAGCAACACAGACATACATCATGATCCCAACTCAGTAAAGATAGAAGACGCAGCTATAAAGGCCCAACCGCACCTTGCGGATTATGTGTAACAGACTATGATATTAGTTAGCAGCAGTGTGGTTTTGTTCTGTTTAGCAAAATGCCAAAGTTGGTTAGTAGTTTGTGAATTCTGTTAGTAGCCTCGCTGATCGGTGAGCTTGTTAGCCACCAAAAGCTTATATAAAGAACCACTGAAAGAAATAAAACACAGAATATGCATTATCAGATTTTTTATTTTTTTTTAGTAATCGGAGATTACTTGACCTCGA
Coding sequences of Glyma08g06261
>Glyma08g06261.1   sequence type=CDS   gene model=Glyma08g06261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGGCAAGGATTGCTAGGGCCAACCTGAGAAGATCAGGAGGTGCTTTGGGCAGTTCTGCTCATGAGAAGGATATGTTCAATGTGGGAGGATACACAAGCAGATCCAACATACCTTCCCATAAATTTTTTGAATCAGATCGAAAGTTTTCATATGTTCCAAGAATTAAGGAACAGAACTACATAAACTTTTCAATGAGGGGAATATCAGGAACACCATACGATCACTTTCCTTCTGCTAGCACACAGACTGTTATAGAGGAGTCCGAGTATGAGTTTGAGAGTGATCGGCAAAGATATGCAGGACTACAGCCAACAAAGCCAGGTGAAAAGCCTAGGGTGGTTGTTATTGGTACGGGTTGGGCCGCGTGCCGGTTCCTCAAAGGGATAGACACCAGAATTTATGATGTTGTGTGCATATCACCAAGGAATCACATGGTCTTTACTCCTTTACTAGCTTCAACTTGTGTTGGAACCCTGGAATTCAGAACTGTTGCTGAGCCTGTATCCAGAATACAGGATTCATTAGCAAGGGACCCTAACTCCTACTTCTTTCTAGCTTCTTGCACTGGCATTGACACAGGCAAACATGAAATCTATTGTGAGGCAGTTAACAATGGTGGATTGCCTCAAGAGCCTTACCAATTCAAAGTCGCGTATGACAAGCTTGTAATTGCATCAGGATCTGAGCCTTTAACTTTTGGTATCAAGGGAGTAAAGGAAAATGCTTTTTTTCTTCGCGAAGTGAACCATGCTCAAGAAATAAGGAAGAGACTTCTCCTTAATCTGATGCTTTCTGAAAATCCAGGCATATCGGAAGAAGACAAGAAACGCCTTCTACACTGTGTAGTTATTGGAGGTGGTCCTACCGGAGTGGAATTTAGTGGTGAATTGAGTGATTTCATCATGAGAGATGTTCAGGAGCGCTATACTCATGTCAAAGATTACATTCACGTCACACTCATTGAGGCAAACGAGATACTGTCATCCTTTGATGTTAGCCTACGGCAATATGCAACAAAGCACTTAACAAAGTCCGGGGTCCGTCTTATGCGAGGTGTGGTGAAGGAGGTGCATCCCAAAAAGATAATTCTGAGTGATGGAACAGAGGTTCCTTATGGCCTCTTGGTTTGGTCCACAGGGGTTGGTGCCTCTGAGTTTGTGAAAACACTAGATCTTCCTAAGTCTCAAGGTGGAAGAATTGGTGTAGATGATTGGCTGCGTGTTCCCTCAGTGGAAGATGTATTTGCCCTTGGAGATTGTGCTGGTTTTCTTGAACACACTGGAAGGCCTGTGCTTCCAGCTCTAGCTCAGGTTGCTGAAAGGCAGGGAAAGTTTCTTGTGGAGTTGTTCGACGAAATAGGGAATCAGAATGGAGGCAAGGCTTATTCTGCGAAAGGCATGCCACTTGGAGAACCTTTTGTATATAAGCATCTTGGGAGCATGGCATCAGTAGGTGGCTACAAAGCACTGGTTGATCTACGACAGTCAAAGGATTCAAAGGGATTGTCACTTGCTGGTTTTGTTAGCTGGATGATATGGCGCTCTGCATATCTGACACGTGTCCTTAGCTGGAGGAACAGGTTTTACGTGGCAGTCAACTGGGCCACCACATTAGTCTTCGGTAGAGACAACAGCAGGATAGGTTGA

>Glyma08g06261.2   sequence type=CDS   gene model=Glyma08g06261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGGCAAGGATTGCTAGGGCCAACCTGAGAAGATCAGGAGGTGCTTTGGGCAGTTCTGCTCATGAGAAGGATATGTTCAATGTGGGAGGATACACAAGCAGATCCAACATACCTTCCCATAAATTTTTTGAATCAGATCGAAAGTTTTCATATGTTCCAAGAATTAAGGAACAGAACTACATAAACTTTTCAATGAGGGGAATATCAGGAACACCATACGATCACTTTCCTTCTGCTAGCACACAGACTGTTATAGAGGAGTCCGAGTATGAGTTTGAGAGTGATCGGCAAAGATATGCAGGACTACAGCCAACAAAGCCAGGTGAAAAGCCTAGGGTGGTTGTTATTGGTACGGGTTGGGCCGCGTGCCGGTTCCTCAAAGGGATAGACACCAGAATTTATGATGTTGTGTGCATATCACCAAGGAATCACATGGTCTTTACTCCTTTACTAGCTTCAACTTGTGTTGGAACCCTGGAATTCAGAACTGTTGCTGAGCCTGTATCCAGAATACAGGATTCATTAGCAAGGGACCCTAACTCCTACTTCTTTCTAGCTTCTTGCACTGGCATTGACACAGGCAAACATGAAATCTATTGTGAGGCAGTTAACAATGGTGGATTGCCTCAAGAGCCTTACCAATTCAAAGTCGCGTATGACAAGCTTGTAATTGCATCAGGATCTGAGCCTTTAACTTTTGGTATCAAGGGAGTAAAGGAAAATGCTTTTTTTCTTCGCGAAGTGAACCATGCTCAAGAAATAAGGAAGAGACTTCTCCTTAATCTGATGCTTTCTGAAAATCCAGGCATATCGGAAGAAGACAAGAAACGCCTTCTACACTGTGTAGTTATTGGAGGTGGTCCTACCGGAGTGGAATTTAGTGGTGAATTGAGTGATTTCATCATGAGAGATGTTCAGGAGCGCTATACTCATGTCAAAGATTACATTCACGTCACACTCATTGAGGCAAACGAGATACTGTCATCCTTTGATGTTAGCCTACGGCAATATGCAACAAAGCACTTAACAAAGTCCGGGGTCCGTCTTATGCGAGGTGTGGTGAAGGAGGTGCATCCCAAAAAGATAATTCTGAGTGATGGAACAGAGGTTCCTTATGGCCTCTTGGTTTGGTCCACAGGGGTTGGTGCCTCTGAGTTTGTGAAAACACTAGATCTTCCTAAGTCTCAAGGTGGAAGAATTGGTGTAGATGATTGGCTGCGTGTTCCCTCAGTGGAAGATGTATTTGCCCTTGGAGATTGTGCTGGTTTTCTTGAACACACTGGAAGGCCTGTGCTTCCAGCTCTAGCTCAGGTTGCTGAAAGGCAGGGAAAGTTTCTTGTGGAGTTGTTCGACGAAATAGGGAATCAGAATGGAGGCAAGGCTTATTCTGCGAAAGGCATGCCACTTGGAGAACCTTTTGTATATAAGCATCTTGGGAGCATGGCATCAGTAGGTGGCTACAAAGCACTGGTTGATCTACGACAGTCAAAGGATTCAAAGGGATTGTCACTTGCTGGTTTTGTTAGCTGGATGATATGGCGCTCTGCATATCTGACACGTGTCCTTAGCTGGAGGAACAGGTTTTACGTGGCAGTCAACTGGGCCACCACATTAGTCTTCGGTAGAGACAACAGCAGGATAGGTTGA
Predicted protein sequences of Glyma08g06261
>Glyma08g06261.1   sequence type=predicted peptide   gene model=Glyma08g06261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALARIARANLRRSGGALGSSAHEKDMFNVGGYTSRSNIPSHKFFESDRKFSYVPRIKEQNYINFSMRGISGTPYDHFPSASTQTVIEESEYEFESDRQRYAGLQPTKPGEKPRVVVIGTGWAACRFLKGIDTRIYDVVCISPRNHMVFTPLLASTCVGTLEFRTVAEPVSRIQDSLARDPNSYFFLASCTGIDTGKHEIYCEAVNNGGLPQEPYQFKVAYDKLVIASGSEPLTFGIKGVKENAFFLREVNHAQEIRKRLLLNLMLSENPGISEEDKKRLLHCVVIGGGPTGVEFSGELSDFIMRDVQERYTHVKDYIHVTLIEANEILSSFDVSLRQYATKHLTKSGVRLMRGVVKEVHPKKIILSDGTEVPYGLLVWSTGVGASEFVKTLDLPKSQGGRIGVDDWLRVPSVEDVFALGDCAGFLEHTGRPVLPALAQVAERQGKFLVELFDEIGNQNGGKAYSAKGMPLGEPFVYKHLGSMASVGGYKALVDLRQSKDSKGLSLAGFVSWMIWRSAYLTRVLSWRNRFYVAVNWATTLVFGRDNSRIG*

>Glyma08g06261.2   sequence type=predicted peptide   gene model=Glyma08g06261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALARIARANLRRSGGALGSSAHEKDMFNVGGYTSRSNIPSHKFFESDRKFSYVPRIKEQNYINFSMRGISGTPYDHFPSASTQTVIEESEYEFESDRQRYAGLQPTKPGEKPRVVVIGTGWAACRFLKGIDTRIYDVVCISPRNHMVFTPLLASTCVGTLEFRTVAEPVSRIQDSLARDPNSYFFLASCTGIDTGKHEIYCEAVNNGGLPQEPYQFKVAYDKLVIASGSEPLTFGIKGVKENAFFLREVNHAQEIRKRLLLNLMLSENPGISEEDKKRLLHCVVIGGGPTGVEFSGELSDFIMRDVQERYTHVKDYIHVTLIEANEILSSFDVSLRQYATKHLTKSGVRLMRGVVKEVHPKKIILSDGTEVPYGLLVWSTGVGASEFVKTLDLPKSQGGRIGVDDWLRVPSVEDVFALGDCAGFLEHTGRPVLPALAQVAERQGKFLVELFDEIGNQNGGKAYSAKGMPLGEPFVYKHLGSMASVGGYKALVDLRQSKDSKGLSLAGFVSWMIWRSAYLTRVLSWRNRFYVAVNWATTLVFGRDNSRIG*






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