SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17660 | AT | Annotation by Michelle Graham. TAIR10: ARF-GAP domain 15 | chr3:6037717-6039092 FORWARD LENGTH=232 | SoyBase | E_val: 5.00E-70 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG0703 | KOG | Predicted GTPase-activating protein | JGI | ISS | |
| PTHR23180 | Panther | CENTAURIN/ARF | JGI | ISS | |
| PTHR23180:SF31 | Panther | ARF-LIKE | JGI | ISS | |
| PF01412 | PFAM | Putative GTPase activating protein for Arf | JGI | ISS | |
| UniRef100_G7KLP2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein AGD4 n=1 Tax=Medicago truncatula RepID=G7KLP2_MEDTR | SoyBase | E_val: 5.00E-108 | ISS |
| UniRef100_UPI0002338CC1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338CC1 related cluster n=1 Tax=unknown RepID=UPI0002338CC1 | SoyBase | E_val: 0 | ISS |
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Glyma08g06230 not represented in the dataset |
Glyma08g06230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g057700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g06230.3 sequence type=transcript gene model=Glyma08g06230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCAAATTGATATGTCAAAGTGAGAAAGAAAGAGGGAGTGATGATGTTGGTAGAGTTGGAAGTCACGCCAAACTGAGACAGCAATGCTTTTGTTTGGGCTAATAAAACCGTTTTCTTTGTTTCTGCTTCTCAGTTGCTGAACCTAACCCACACACGCAACATTTTCCTTCCTTTCTTGTTTTGCTCTGCACTGTCACGTCAATATGAACGGGAAAGCCTCCATCTCCAAGGAGCTCAATGCCAAGCACGCCAAGATATTAGAAGGACTTCTTAAGCTGCCTGAGAACAGGGAATGCGCAGACTGCCGGAACAAGGCACCACGATGGGCAAGTGTGAACCTAGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGTCTTGGAGTTCATATATCAAAGGTGCGGTCTACAACTTTAGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAATTAATGGGTAATGAGAAGTCAAATAAGCACTGGGAGGAAAAAATTCCACCAAATTTTGATAGAAGTAAATTGGGAATTGAGAAGTTTATCCGTGACAAGTATGTGGAGAAAAGATGGGCTTCAAAAGAAGAACTGCAATCAACTTCAAGGACAGGTGAAATAATCTATAATTTTGATGAGTCACCAAATGGAGGGGCTAGGAGTGGTATTCTGAAGAACAACAGGAGACTTTCTCTTGAAGAAAGTATTCTTGCTAACCACGTGGCACAAATTCTACCTCCAATAACAAGATCTCGTGGGGGTTTTACTTTTATAGACACGCAAAAGAAGAATTCACCTCCATTAAAAAGGCCATCCTCATCAGTTGATTTTGACAAGTCCACAGGAAAGAGCAATGGCACTGGTGACATTTTCAACTTGCTTTGCATCTATGATGATAACCAGAACTTCTCAACCATGCCTCCTTCAAGTTGGGCAACATTTGATTGAGATGTGCCAGCGTTTTAAGTTTATAGCTTGTTCAACTAATCCTTGGTGTAGAAGTCACAAGATTATAGTTACAGATGACGCTGTGAAGTGGCATGAGCATTGAGCTGCATAAGTTTAGTGTTTGTTACAGTACGATGTTTTGAATAATCAACACATTGCAGTAGGATATAACATCTACACCACTTTCACTTTGGTGTTGAGATCGTCCATAGTATGGTTTGGTTTGCAGTTAGTTCATGGTTCATTTTTCTTACAGCATTAACTAATTTGAGATGGGCAAGAGGATGGAGGACATAATAGTTATGTTTCTTCTTTCACTAAGTTTTCTTCTCTGGTCTGCGATAGATAAAAACATTGTAAATTTAATTATTACTTGACTTATATTTGTCCATCTTCTACTTTCC
>Glyma08g06230.2 sequence type=CDS gene model=Glyma08g06230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACGGGAAAGCCTCCATCTCCAAGGAGCTCAATGCCAAGCACGCCAAGGTGGAAGATGGTCACAGGAAAACCATTCTCATGCTGCCACTCTCACAGCTGATGCTTGGGCACTTGTCTAGTCAATCTATTAGTAAGAGTTCAAGTGTGCAGCCCATACGCACAATTTCCCAGTTATCTTCTCTTTCCCAGTCATGTCGACTAAAAATATTAGAAGGACTTCTTAAGCTGCCTGAGAACAGGGAATGCGCAGACTGCCGGAACAAGGCACCACGATGGGCAAGTGTGAACCTAGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGTCTTGGAGTTCATATATCAAAGGTGCGGTCTACAACTTTAGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAATTAATGGGTAATGAGAAGTCAAATAAGCACTGGGAGGAAAAAATTCCACCAAATTTTGATAGAAGTAAATTGGGAATTGAGAAGTTTATCCGTGACAAGTATGTGGAGAAAAGATGGGCTTCAAAAGAAGAACTGCAATCAACTTCAAGGACAGGTGAAATAATCTATAATTTTGATGAGTCACCAAATGGAGGGGCTAGGAGTGGTATTCTGAAGAACAACAGGAGACTTTCTCTTGAAGAAAGTATTCTTGCTAACCACGTGGCACAAATTCTACCTCCAATAACAAGATCTCGTGGGGGTTTTACTTTTATAGACACGCAAAAGAAGAATTCACCTCCATTAAAAAGGCCATCCTCATCAGTTGATTTTGACAAGTCCACAGGAAAGAGCAATGGCACTGGTGACATTTTCAACTTGCTTTGCATCTATGATGATAACCAGAACTTCTCAACCATGCCTCCTTCAAGTTGGGCAACATTTGATTGA >Glyma08g06230.3 sequence type=CDS gene model=Glyma08g06230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACGGGAAAGCCTCCATCTCCAAGGAGCTCAATGCCAAGCACGCCAAGATATTAGAAGGACTTCTTAAGCTGCCTGAGAACAGGGAATGCGCAGACTGCCGGAACAAGGCACCACGATGGGCAAGTGTGAACCTAGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGTCTTGGAGTTCATATATCAAAGGTGCGGTCTACAACTTTAGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAATTAATGGGTAATGAGAAGTCAAATAAGCACTGGGAGGAAAAAATTCCACCAAATTTTGATAGAAGTAAATTGGGAATTGAGAAGTTTATCCGTGACAAGTATGTGGAGAAAAGATGGGCTTCAAAAGAAGAACTGCAATCAACTTCAAGGACAGGTGAAATAATCTATAATTTTGATGAGTCACCAAATGGAGGGGCTAGGAGTGGTATTCTGAAGAACAACAGGAGACTTTCTCTTGAAGAAAGTATTCTTGCTAACCACGTGGCACAAATTCTACCTCCAATAACAAGATCTCGTGGGGGTTTTACTTTTATAGACACGCAAAAGAAGAATTCACCTCCATTAAAAAGGCCATCCTCATCAGTTGATTTTGACAAGTCCACAGGAAAGAGCAATGGCACTGGTGACATTTTCAACTTGCTTTGCATCTATGATGATAACCAGAACTTCTCAACCATGCCTCCTTCAAGTTGGGCAACATTTGATTGA
>Glyma08g06230.2 sequence type=predicted peptide gene model=Glyma08g06230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGKASISKELNAKHAKVEDGHRKTILMLPLSQLMLGHLSSQSISKSSSVQPIRTISQLSSLSQSCRLKILEGLLKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQLMGNEKSNKHWEEKIPPNFDRSKLGIEKFIRDKYVEKRWASKEELQSTSRTGEIIYNFDESPNGGARSGILKNNRRLSLEESILANHVAQILPPITRSRGGFTFIDTQKKNSPPLKRPSSSVDFDKSTGKSNGTGDIFNLLCIYDDNQNFSTMPPSSWATFD* >Glyma08g06230.3 sequence type=predicted peptide gene model=Glyma08g06230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGKASISKELNAKHAKILEGLLKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQLMGNEKSNKHWEEKIPPNFDRSKLGIEKFIRDKYVEKRWASKEELQSTSRTGEIIYNFDESPNGGARSGILKNNRRLSLEESILANHVAQILPPITRSRGGFTFIDTQKKNSPPLKRPSSSVDFDKSTGKSNGTGDIFNLLCIYDDNQNFSTMPPSSWATFD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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