Glyma08g06220 - SoyBase

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Report for Sequence Feature Glyma08g06220

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4415846
stop:	4422691
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17850	AT	Annotation by Michelle Graham. TAIR10: Rhodanese/Cell cycle control phosphatase superfamily protein \| chr1:6146470-6148820 REVERSE LENGTH=448	SoyBase	E_val: 6.00E-152	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR18838	Panther	RHODANESE-LIKE DOMAIN-CONTAINING	JGI		ISS
PF00581	PFAM	Rhodanese-like domain	JGI		ISS
UniRef100_F4I933	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhodanese-like domain-containing protein 8, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=STR8_ARATH	SoyBase	E_val: 3.00E-149	ISS
UniRef100_UPI0002338CC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338CC0 related cluster n=1 Tax=unknown RepID=UPI0002338CC0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06220

Paralog	Evidence	Comments
Glyma05g33510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g06220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06220

Limit To All Plant Sequences

>Glyma08g06220.2   sequence type=CDS   gene model=Glyma08g06220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGTACCCTCTGCACTGCCACTAACACAGCCCTCAAGTTCAAGGAAGGATTTTGATTTTGTTGTCGTCAATTTCTACCACTTTGTGTTCATCCAAGACCCACAAGCTGAAGTTGCCAAACACCGTTCTTTCTTGGAATTGGAGGGTCTTGACATCAATGGAAGAGTCTATTTGAATGAACAAGGGATTAATGCGCAGTATAGTGGACCATCAAAAGATGCTATGGCATATGTCAACTGGTTAAGAAAGGATAACAGGTTTTCCAACATCTTGGTTCAGATATCTCCATCAGAAAAAGGACATACCTTTCCAATATTGAAGTTGCGTTATAAGTCTTCATTAGTACAGGGCAATGGCTTATCACCTTCAGAATGGAGAGATAGATTGGAAGCAATCAATAAAACTGATCTTACTGGAAAAGATAACCCAAACAGAAATTACATTCTATTGGATGTGAGAAATGGTTATGAGTGGGATATTGGACATTTTCATGGGGCTCAACGACCTAGTGTGGACTGCTTTAGGAACACTTCATTTGGTCTGTCTCAGGAAGAGATCACTGCTTCAGATCCTTTATCAAATGTAGATGAAGAAAAAGCAAACATATTGATGTATTGCACTGGAGGGATTCGCTGTGATCAGGGATTTCAAAATTTGTATACCCTGAAGGGAGGCGTTTCTCACTATCTAAAGAATGAAGTCCCTGCAGAATGGGTAGGAAATTTATTTGTATTTGACTCCCGTCTATCTCTCCCTCCTTCTATTTACTATACCGGGGCCACAACTCAAGCAGAGTCAAATCCAGTTTCTGGAGATGATAATTTTGCAAAATGCTACGTATGTAGTTTGAAAGTCAGTGAATTGAGACATAGGAACTGTGCAAATCTTGATTGTAATTTGCTTTTTCTATGCTGCAGACAATGTGTAGAGGATCTAAGAGGTTGTTGTTGTTTGACGTGCACTACTGCTCCTCGGCGTAGACCTGTCTTAAATGGAATGCAGAGATACAAAAAATGGCACTACTATCGGGATATGGATTTTCAAGGGAAACTGAAAATTTCAACTTGA

Predicted protein sequences of Glyma08g06220

Limit To All Plant Sequences

>Glyma08g06220.2   sequence type=predicted peptide   gene model=Glyma08g06220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LVPSALPLTQPSSSRKDFDFVVVNFYHFVFIQDPQAEVAKHRSFLELEGLDINGRVYLNEQGINAQYSGPSKDAMAYVNWLRKDNRFSNILVQISPSEKGHTFPILKLRYKSSLVQGNGLSPSEWRDRLEAINKTDLTGKDNPNRNYILLDVRNGYEWDIGHFHGAQRPSVDCFRNTSFGLSQEEITASDPLSNVDEEKANILMYCTGGIRCDQGFQNLYTLKGGVSHYLKNEVPAEWVGNLFVFDSRLSLPPSIYYTGATTQAESNPVSGDDNFAKCYVCSLKVSELRHRNCANLDCNLLFLCCRQCVEDLRGCCCLTCTTAPRRRPVLNGMQRYKKWHYYRDMDFQGKLKIST*

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