Report for Sequence Feature Glyma08g06190
Feature Type: gene_model
Chromosome: Gm08
Start: 4406871
stop: 4411597
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g06190
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G73360 AT
Annotation by Michelle Graham. TAIR10: homeodomain GLABROUS 11 | chr1:27578893-27581820 REVERSE LENGTH=722
SoyBase E_val: 0 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0010091 GO-bp
Annotation by Michelle Graham. GO Biological Process: trichome branching
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
KOG0484
KOG
Transcription factor PHOX2/ARIX, contains HOX domain
JGI ISS
PTHR24325 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24325:SF193 Panther
JGI ISS
PF00046 PFAM
Homeobox domain
JGI ISS
PF01852 PFAM
START domain
JGI ISS
UniRef100_I1KQN6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQN6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q66Q67 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Homeodomain protein HOX3 n=1 Tax=Gossypium hirsutum RepID=Q66Q67_GOSHI
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g06190
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g06190
Paralog Evidence Comments
Glyma05g33520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g06190 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g057400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g06190
Coding sequences of Glyma08g06190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g06190.1 sequence type=CDS gene model=Glyma08g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTACGGTAGCGGAGGCGGTGGGTCACAGTCCCCAGGGGAGCAAGATGGCTCAGATTCCCAAGAGAGGAGGAAGCGCTATCATCGTCATACTGCCAATCAGATTCAGAGGCTTGAGTCAATGTTCAAAGAGTGCCCCCATCCGGATGAGAAACAAAGGTTGCAATTAAGCAGGGAGTTAGGCCTGGCCCCGAGGCAGATCAAGTTCTGGTTCCAAAATAGGAGGACCCAAATGAAGGCCCAACACGAAAGAGCTGACAATTGTGCTCTTCGAGCTGACAATGACAAGATACGTTGCGAGAACATAGCCATCAGGGAGGCCTTGAAGAATGTTATCTGCCCTTCTTGTGGTGCCCCACCTCTCAATGACGATTGTTATTTTGATGACCAAAAGTTGCGATTAGAGAACGCCCACCTCAAAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAATGGCGAGTTATGGAAACCAAGGGATGGTTGGTCCTGCTCCTTCTTCCCTTAATCTTGATCTTCTTCCTGCTGCAGGGACTTCCTCATCATCCATGCCTTATCATCCCCCTTGCCTTTCGGACATGGACAAGTCCCTCATGTCAGACATTGCTTCCAATGCCATGGAAGAATTTCTAAGGCTCGTGCAGACAAACGAACCCTTGTGGCTTAAATCAAACGTCGATGCTAGAGATGTTCTTAGTTGTGATGCCTACGAAAGAATGTTCCACAAGCCCAATACTCGCCCCAAGAATCCTAACGTTCGCATTGAAGCATCCCGAGATTCTGGAGTTGTATTAATGAATACTTTAGCTTTGGTTGATATGTTTATGGACCCAAACAAGTGGATACAACTTTTTCCCACTATTGTCTCTGTGGCAAGGACTATTCAAGTCATATCTTCTGGGATGATGGGCAGTTGCAGTGGTTCTTTACAATTGATGTATCAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCAACTCGGGAGTTTTACTTCCTGCGTTACTGTCAGCAAATTGAGCAGGGAACATGGGCAGTAATGGACGTTTCTTATGATTTTCCCCAAGATAGCCACTATGCTCCTCAATTTCGGTCTCATCGTTGTCCTTCTGGTTGCTTGATCCAGGACATGCCTGATGGGCATTCCAAGATTACTTGGGTTGAACACGTAGAGATTGAAGATAAGACTCTTCCTCACCGGCTTTATAGAAATCTTATTTATAGTGGGATGGCATTTGGAGCTGAAAGATGGCTTACTACCCTCCAGAGGATGTGTGAAAGACTTACTTATCTGATGGCTACAAGCAATCCTACCCGGGATAATCTAGGAGGAGTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCAATTTTTGTGCCAACATTAGCACATCAAGTGGCCATCGATGGACCACGCTCTCTGGATTGAATGAAATCGTAGTAAGAGTCACTGTCCACAAAAGCTCAGATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACTATTTGGCTCCCCACCCCTCCTCACGCTGTCTTTAATTTCTTCAAGGATGAAAACAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGAGCTTTCAACAACAGTACTCAGAACATGTTAATACTACAAGAAAGCTGCATAGATTCCTATGGTTCATTTGTGGTTTATTGCCCAGTTGATCTGCCATCCATCAACTTAGCAATGAGTGGTGAAGACCCTTCATACATTCCCCTACTACCAAATGGATTTACCATTTTGCCTGATGGTCAGCCTGACCAGGAAGGAGATGATGGAGCATCAACCAGCTCTAACAACGCAAACAGGAATATAGTAAGGTCTGGTGGTTCACTAGTTACAATTGCATTCCAAATTCTTGTGAGCAGCTTGCCATCTGCTAAACTCAATATGGAGTCGGTGACAACTGTTAACAATCTTATTGGCTCCACTGTCCAGCAAATAAAGTCTTCCTTAAGTTGTCCTACCCTACCTAGCTAG
Predicted protein sequences of Glyma08g06190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g06190.1 sequence type=predicted peptide gene model=Glyma08g06190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEYGSGGGGSQSPGEQDGSDSQERRKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRADNDKIRCENIAIREALKNVICPSCGAPPLNDDCYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMASYGNQGMVGPAPSSLNLDLLPAAGTSSSSMPYHPPCLSDMDKSLMSDIASNAMEEFLRLVQTNEPLWLKSNVDARDVLSCDAYERMFHKPNTRPKNPNVRIEASRDSGVVLMNTLALVDMFMDPNKWIQLFPTIVSVARTIQVISSGMMGSCSGSLQLMYQELQVLSPLVSTREFYFLRYCQQIEQGTWAVMDVSYDFPQDSHYAPQFRSHRCPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLTTLQRMCERLTYLMATSNPTRDNLGGVISSPEGKRSMMKLAQRMVTNFCANISTSSGHRWTTLSGLNEIVVRVTVHKSSDPGQPNGVVLSAATTIWLPTPPHAVFNFFKDENKRPQWDVLSNGNAVQEVANIANGLHPGNSISVLRAFNNSTQNMLILQESCIDSYGSFVVYCPVDLPSINLAMSGEDPSYIPLLPNGFTILPDGQPDQEGDDGASTSSNNANRNIVRSGGSLVTIAFQILVSSLPSAKLNMESVTTVNNLIGSTVQQIKSSLSCPTLPS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
