Glyma08g06110 - SoyBase

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Report for Sequence Feature Glyma08g06110

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4330330
stop:	4333176
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73480	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr1:27629266-27632486 FORWARD LENGTH=463	SoyBase	E_val: 1.00E-160	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1455	KOG	Lysophospholipase	JGI		ISS
PTHR11614	Panther	PHOSPHOLIPASE-RELATED	JGI		ISS
PTHR11614:SF20	Panther	LYSOPHOSPHOLIPASE	JGI		ISS
PF12146	PFAM	Putative lysophospholipase	JGI		ISS
UniRef100_D7KRI7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, alpha/beta fold family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KRI7_ARALL	SoyBase	E_val: 4.00E-159	ISS
UniRef100_UPI0001CDD6A2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001CDD6A2 related cluster n=1 Tax=unknown RepID=UPI0001CDD6A2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06110

Paralog	Evidence	Comments
Glyma05g33610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g056600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06110

Limit To All Plant Sequences

>Glyma08g06110.1   sequence type=CDS   gene model=Glyma08g06110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTGGGAATGGGAAGTGAGGGTATGGTTTTGACCACGTTGATTTTGACGTCCGGGGCCAGCGGCCGAATCCTTGGCTTCTTCAACGCCCTCCTTTTGCTCCTTCTCTATCTCTTCCCCACCACCACCATGCGCCTCGCCTCCTGGAAGAGTACCTCCACGTGGACGTCGTCGAGGAGGGCGTTGGCCATTCGGAGGGTGTTGGAGGATGCAGATTCAGATGGAACCACATTCAGGGAGTACCATCTCTTTTCAACCTCAAGGTGTGACACCATTTTTACCCAGTCTTGGATTCCTCGCTCTCCTAGCAATACCATCAGGGGACTTGTTATTCTTATGCATGGACTTAATGAACACAGTGGCAGATATACTCATTTCGCAAAGCACCTCAATGCTAATGGTTTCAAGGTTTACGGGATGGATTGGCTTGGCCACGGTGGAAGTGATGGGTTGCATGGTTATGTCCATTCTCTTGATGATGTTGTTTCTGATACGAAAATATTTTTGGAGAAGGTTCTTAACGAAAATCCTGGGCTTCCATGTTTCTGCTTTGGACACTCAACAGGAGCAGCCATTATTCTTAAGGCTCTGCTTGACCCAAAGGTTGAATCTCGCATAGCTGGTGCTGTTTTGACATCACCAGCAGTTGGTGTTTCCCCTTCTCATCCAATTTTGCTGGCACTTGCTCCTATAGCTTCAATTTTGCTGCCAACGTATCAATGTAGTTCTGCATATAAGAAGGGGTCACCAGTGTCTAGAGACCCAGAGGCGCTAATTGCTAAATATTCTGATCCATTAGTATGTACTGGACCTCTTAGAGTACGTACTGGTTATGAGATTCTCAGAATTACAAGCTACTTGCAGCGAAATCTGAGAAAATTGAGAGTTCCATTTTTTGTTCTCCATGGCACTGCTGATTCCGTGACTGATCCCATTGCTTCACAAAAATTATATGTAGAAGCCTCCTCATCTGACAAAACTATCAGACTATACGATGGTTTCTTACATGACCTGCTCTTTGAACCCGAACGAGATGCTATCACACAGGACATAATTCAATGGCTAAACAATAGAGTATGA

Predicted protein sequences of Glyma08g06110

Limit To All Plant Sequences

>Glyma08g06110.1   sequence type=predicted peptide   gene model=Glyma08g06110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVGMGSEGMVLTTLILTSGASGRILGFFNALLLLLLYLFPTTTMRLASWKSTSTWTSSRRALAIRRVLEDADSDGTTFREYHLFSTSRCDTIFTQSWIPRSPSNTIRGLVILMHGLNEHSGRYTHFAKHLNANGFKVYGMDWLGHGGSDGLHGYVHSLDDVVSDTKIFLEKVLNENPGLPCFCFGHSTGAAIILKALLDPKVESRIAGAVLTSPAVGVSPSHPILLALAPIASILLPTYQCSSAYKKGSPVSRDPEALIAKYSDPLVCTGPLRVRTGYEILRITSYLQRNLRKLRVPFFVLHGTADSVTDPIASQKLYVEASSSDKTIRLYDGFLHDLLFEPERDAITQDIIQWLNNRV*

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