Glyma08g06090 - SoyBase

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Report for Sequence Feature Glyma08g06090

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4323944
stop:	4326645
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17790	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 17 \| chr3:6089779-6090988 FORWARD LENGTH=338	SoyBase	E_val: 2.00E-165	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0030643	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular phosphate ion homeostasis	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009986	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell surface	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
KOG2679	KOG	Purple (tartrate-resistant) acid phosphatase	JGI		ISS
PTHR10161	Panther	ACID PHOSPHATASE-RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_E2D740	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Purple acid phosphatase n=1 Tax=Phaseolus vulgaris RepID=E2D740_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_I1KQM7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQM7_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08g06090

Locus	Gene Symbol	Protein Name
	PAP13	Purple acid phosphatase 13 gene
	PAP13	Purple acid phosphatase gene 12

Expression Patterns of Glyma08g06090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06090

Paralog	Evidence	Comments
Glyma05g33630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g056400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g06090

Limit To All Plant Sequences

>Glyma08g06090.2   sequence type=transcript   gene model=Glyma08g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAATCAAATTCAATCATCAATGGAGTTGCGTAGGAGAGCTATAATATACAGGAAGCAGAGCATCCTATCCGAATATTCTCCTAGATATGCCTTTCTCTTTAATATTGGGTGTCGAATATTCTACCCTTTCGTGCTTATTCCACTGCCATTACTGTTGTATGGCATGGCATATTCGCATATATCACCAATGTTTTTCAATTCAATTGCTTATTCTACCAATTGTCTGCCAACACAACAGTTGCCCATCACCGTTTATCCTATCCCAGCAAGAACCATGCACTGCATTTTCTGACAAATTCAACCAATCTGAATTAAATTCACATTCACATCACGCTGCATTCTTTATTTCTCCAAATTTTCAATTTTTTTACTAGCTAACTAAATGACCAGAAGATGAGTTTAGGACATATTTTGTATCATTAAATTCCAACATTATATTACTTTTCCTTACTTATCTAATAGTAATTGTTTTTCAACAACTTCATATCATATTATATTATTCCACAACCTAGGATCCATTCATTTGAGAGTTTTAAAGTTCAACACGTACGGGTTAGATACCCCCGCCCCCCCCCCCCCCCCCCCCCAACCTTTTTCTTATTGGCATGAGCCTGTCTCTCTATCCTGTGTAATCTGAAGCTTTTTTTTTTTAAAGTGACAAGCTTTTGCTTGTTTTGGTGTTCCAGTTCCAGTTAGAGCCATGTCCATGTCCTTTCTCTTTACCTTTACCATCATCATCAGCTTTGGCTTGTGCATTCTTTATGCATCTGCAGAACTCCAGAGATTATCACACTCTTCCAAACATGATGGTGCTCTTAGCTTCTTGGTGCTTGGTGACTGGGGAAGAAGAGGCGCTTACAACCAATCACAAGTTTCTTTCCAGTCTGAAAAATGAACTTGCAGATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTCAAGAGTCATTCACTCAAATTTACACAGCAAAAAGCTTGCAAAAGCAGTGGTACAGCGTGTTAGGCAACCACGACTATAGGGGTGATGCAGAGGCCCAATTGAGCCCGGTCCTTAGAGAAATTGATAGCAGATGGCTTTGCTTAAGGTCCTTTATTGTAGATTCAGAGCTGGTTGAGATTTTCTTTGTAGACACCACTCCTTTTGTTGAAGAGTACTTCACTGAACCACAGGAACACAAGTATGATTGGCGGGGCATTGGCCCACAAAAACCTTATATTACTAACTTACTCAAGGACCTAGAATTGGCACTGAGGGAATCAACAGCAAAATGGAAGATTGTTGTTGGTCATCATGCCATTAGAAGTGTTGGGCATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGACATTAAAGGAATGAACCGAAGAGACGTAAATTTCTTCTATGATGGACAAGGCTTCATGTCTGTGAAATTGACTCAGACGGATGCCACCATTGAGTTCTATGATGTTTTTGGCAACGTTTTACACAGATTGACTTCTTCAAAACAGCTACATTCTTCTATGTAATGTTTAGAGCATTGAGATTAAATAGATCAATCCAAATTGGTTGATGGAATTTAAAACTTATCCTTGATGTCATGCTTGAGTATGTATGAGAAATGAAAATATGAAGGATTATTCACTGTAGTGATGAATTGCTATTTAACTTCTGACTTCTAAATTTAAGATGCAAGAGACGTTATTGTGTACTTAAATTCAATCCACTTGCATTAGTTTGGAAGGCTTTTGTGTTTTAAAAGGCTTTGATTTCAAC

>Glyma08g06090.3   sequence type=transcript   gene model=Glyma08g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAATCAAATTCAATCATCAATGGAGTTGCGTAGGAGAGCTATAATATACAGGAAGCAGAGCATCCTATCCGAATATTCTCCTAGATATGCCTTTCTCTTTAATATTGGGTGTCGAATATTCTACCCTTTCGTGCTTATTCCACTGCCATTACTGTTGTATGGCATGGCATATTCGCATATATCACCAATGTTTTTCAATTCAATTGCTTATTCTACCAATTGTCTGCCAACACAACAGTTGCCCATCACCGTTTATCCTATCCCAGCAAGAACCATGCACTGCATTTTCTGACAAATTCAACCAATCTGAATTAAATTCACATTCACATCACGCTGCATTCTTTATTTCTCCAAATTTTCAATTTTTTTACTAGCTAACTAAATGACCAGAAGATGAGTTTAGGACATATTTTGTATCATTAAATTCCAACATTATATTACTTTTCCTTACTTATCTAATAGTAATTGTTTTTCAACAACTTCATATCATATTATATTATTCCACAACCTAGGATCCATTCATTTGAGAGTTTTAAAGTTCAACACGTACGGGTTAGATACCCCCGCCCCCCCCCCCCCCCCCCCCCAACCTTTTTCTTATTGGCATGAGCCTGTCTCTCTATCCTGTGTAATCTGAAGCTTTTTTTTTTTAAAGTGACAAGCTTTTGCTTGTTTTGGTGTTCCAGTTCCAGTTAGAGCCATGTCCATGTCCTTTCTCTTTACCTTTACCATCATCATCAGCTTTGGCTTGTGCATTCTTTATGCATCTGCAGAACTCCAGAGATTATCACACTCTTCCAAACATGATGGTGCTCTTAGCTTCTTGGTGCTTGGTGACTGGGGAAGAAGAGGCGCTTACAACCAATCACAAGTTTCTTTCCAGATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTCAAGAGTCATTCACTCAAATTTACACAGCAAAAAGCTTGCAAAAGCAGTGGTACAGCGTGTTAGGCAACCACGACTATAGGGGTGATGCAGAGGCCCAATTGAGCCCGGTCCTTAGAGAAATTGATAGCAGATGGCTTTGCTTAAGGTCCTTTATTGTAGATTCAGAGCTGGTTGAGATTTTCTTTGTAGACACCACTCCTTTTGTTGAAGAGTACTTCACTGAACCACAGGAACACAAGTATGATTGGCGGGGCATTGGCCCACAAAAACCTTATATTACTAACTTACTCAAGGACCTAGAATTGGCACTGAGGGAATCAACAGCAAAATGGAAGATTGTTGTTGGTCATCATGCCATTAGAAGTGTTGGGCATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGGTAACTAAAAGCTGAGGATGAAGAACATCGCCTCTCTTTCCTAGTTCCTTTACTTAACTATTCTAATTTTATTTCACTTTCAAATTTCAGGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGACATTAAAGGAATGAACCGAAGAGACGTAAATTTCTTCTATGATGGACAAGGCTTCATGTCTGTGAAATTGACTCAGACGGATGCCACCATTGAGTTCTATGATGTTTTTGGCAACGTTTTACACAGATTGACTTCTTCAAAACAGCTACATTCTTCTATGTAATGTTTAGAGCATTGAGATTAAATAGATCAATCCAAATTGGTTGATGGAATTTAAAACTTATCCTTGATGTCATGCTTGAGTATGTATGAGAAATGAAAATATGAAGGATTATTCACTGTAGTGATGAATTGCTATTTAACTTCTGACTTCTAAATTTAAGATGCAAGAGACGTTATTGTGTACTTAAATTCAATCCACTTGCATTAGTTTGGAAGGCTTTTGTGTTTTAAAAGGCTTTGATTTCAAC

Coding sequences of Glyma08g06090

Limit To All Plant Sequences

>Glyma08g06090.1   sequence type=CDS   gene model=Glyma08g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCATGTCCTTTCTCTTTACCTTTACCATCATCATCAGCTTTGGCTTGTGCATTCTTTATGCATCTGCAGAACTCCAGAGATTATCACACTCTTCCAAACATGATGGTGCTCTTAGCTTCTTGGTGCTTGGTGACTGGGGAAGAAGAGGCGCTTACAACCAATCACAAGTTTCTTTCCAGATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTCAAGAGTCATTCACTCAAATTTACACAGCAAAAAGCTTGCAAAAGCAGTGGTACAGCGTGTTAGGCAACCACGACTATAGGGGTGATGCAGAGGCCCAATTGAGCCCGGTCCTTAGAGAAATTGATAGCAGATGGCTTTGCTTAAGGTCCTTTATTGTAGATTCAGAGCTGGTTGAGATTTTCTTTGTAGACACCACTCCTTTTGTTGAAGAGTACTTCACTGAACCACAGGAACACAAGTATGATTGGCGGGGCATTGGCCCACAAAAACCTTATATTACTAACTTACTCAAGGACCTAGAATTGGCACTGAGGGAATCAACAGCAAAATGGAAGATTGTTGTTGGTCATCATGCCATTAGAAGTGTTGGGCATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGACATTAAAGGAATGAACCGAAGAGACGTAAATTTCTTCTATGATGGACAAGGCTTCATGTCTGTGAAATTGACTCAGACGGATGCCACCATTGAGTTCTATGATGTTTTTGGCAACGTTTTACACAGATTGACTTCTTCAAAACAGCTACATTCTTCTATGTAA

>Glyma08g06090.2   sequence type=CDS   gene model=Glyma08g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTGCAGATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTCAAGAGTCATTCACTCAAATTTACACAGCAAAAAGCTTGCAAAAGCAGTGGTACAGCGTGTTAGGCAACCACGACTATAGGGGTGATGCAGAGGCCCAATTGAGCCCGGTCCTTAGAGAAATTGATAGCAGATGGCTTTGCTTAAGGTCCTTTATTGTAGATTCAGAGCTGGTTGAGATTTTCTTTGTAGACACCACTCCTTTTGTTGAAGAGTACTTCACTGAACCACAGGAACACAAGTATGATTGGCGGGGCATTGGCCCACAAAAACCTTATATTACTAACTTACTCAAGGACCTAGAATTGGCACTGAGGGAATCAACAGCAAAATGGAAGATTGTTGTTGGTCATCATGCCATTAGAAGTGTTGGGCATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCACATTAGTGACACGGAGAGCCCCATTCAGTTCCTGACTAGCGGGGCAGGGTCAAAGGCTTGGAGAGGAGACATTAAAGGAATGAACCGAAGAGACGTAAATTTCTTCTATGATGGACAAGGCTTCATGTCTGTGAAATTGACTCAGACGGATGCCACCATTGAGTTCTATGATGTTTTTGGCAACGTTTTACACAGATTGACTTCTTCAAAACAGCTACATTCTTCTATGTAA

>Glyma08g06090.3   sequence type=CDS   gene model=Glyma08g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCATGTCCTTTCTCTTTACCTTTACCATCATCATCAGCTTTGGCTTGTGCATTCTTTATGCATCTGCAGAACTCCAGAGATTATCACACTCTTCCAAACATGATGGTGCTCTTAGCTTCTTGGTGCTTGGTGACTGGGGAAGAAGAGGCGCTTACAACCAATCACAAGTTTCTTTCCAGATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTCAAGAGTCATTCACTCAAATTTACACAGCAAAAAGCTTGCAAAAGCAGTGGTACAGCGTGTTAGGCAACCACGACTATAGGGGTGATGCAGAGGCCCAATTGAGCCCGGTCCTTAGAGAAATTGATAGCAGATGGCTTTGCTTAAGGTCCTTTATTGTAGATTCAGAGCTGGTTGAGATTTTCTTTGTAGACACCACTCCTTTTGTTGAAGAGTACTTCACTGAACCACAGGAACACAAGTATGATTGGCGGGGCATTGGCCCACAAAAACCTTATATTACTAACTTACTCAAGGACCTAGAATTGGCACTGAGGGAATCAACAGCAAAATGGAAGATTGTTGTTGGTCATCATGCCATTAGAAGTGTTGGGCATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGGTAACTAAAAGCTGA

Predicted protein sequences of Glyma08g06090

Limit To All Plant Sequences

>Glyma08g06090.1   sequence type=predicted peptide   gene model=Glyma08g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMSFLFTFTIIISFGLCILYASAELQRLSHSSKHDGALSFLVLGDWGRRGAYNQSQVSFQMGKVGEKLDIDFVVSTGDNFYDNGLTSDHDNAFQESFTQIYTAKSLQKQWYSVLGNHDYRGDAEAQLSPVLREIDSRWLCLRSFIVDSELVEIFFVDTTPFVEEYFTEPQEHKYDWRGIGPQKPYITNLLKDLELALRESTAKWKIVVGHHAIRSVGHHGDTQELINQLLPILQANNIDFYMNGHDHCLEHISDTESPIQFLTSGAGSKAWRGDIKGMNRRDVNFFYDGQGFMSVKLTQTDATIEFYDVFGNVLHRLTSSKQLHSSM*

>Glyma08g06090.2   sequence type=predicted peptide   gene model=Glyma08g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLQMGKVGEKLDIDFVVSTGDNFYDNGLTSDHDNAFQESFTQIYTAKSLQKQWYSVLGNHDYRGDAEAQLSPVLREIDSRWLCLRSFIVDSELVEIFFVDTTPFVEEYFTEPQEHKYDWRGIGPQKPYITNLLKDLELALRESTAKWKIVVGHHAIRSVGHHGDTQELINQLLPILQANNIDFYMNGHDHCLEHISDTESPIQFLTSGAGSKAWRGDIKGMNRRDVNFFYDGQGFMSVKLTQTDATIEFYDVFGNVLHRLTSSKQLHSSM*

>Glyma08g06090.3   sequence type=predicted peptide   gene model=Glyma08g06090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMSFLFTFTIIISFGLCILYASAELQRLSHSSKHDGALSFLVLGDWGRRGAYNQSQVSFQMGKVGEKLDIDFVVSTGDNFYDNGLTSDHDNAFQESFTQIYTAKSLQKQWYSVLGNHDYRGDAEAQLSPVLREIDSRWLCLRSFIVDSELVEIFFVDTTPFVEEYFTEPQEHKYDWRGIGPQKPYITNLLKDLELALRESTAKWKIVVGHHAIRSVGHHGDTQELINQLLPILQVTKS*

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