Glyma08g06070 - SoyBase

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Report for Sequence Feature Glyma08g06070

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4315777
stop:	4318108
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48450	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF760) \| chr1:17908746-17910345 REVERSE LENGTH=423	SoyBase	E_val: 2.00E-164	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05542	PFAM	Protein of unknown function (DUF760)	JGI		ISS
UniRef100_E4MX37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-13-K15 n=1 Tax=Eutrema halophilum RepID=E4MX37_THEHA	SoyBase	E_val: 4.00E-159	ISS
UniRef100_I1KQM6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQM6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06070

Paralog	Evidence	Comments
Glyma05g33650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g056200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06070

Limit To All Plant Sequences

>Glyma08g06070.1   sequence type=CDS   gene model=Glyma08g06070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTCGCAGTCACTGCCTTCCGGTCACCGCTGATCATCCTCCGAAGACCGGTCAACGAGTCTGCCTCAGCTCGGTTCGGTTCCACTTTTGGGTTTTCCAGAAAGCAACGGTTCAGTTCAGTATGTATCCCCAAACACAAGCACAAGCAAGGTCGTAGAAGAGGGTTTGTAGTTAGAGCTTCTGCATCCTCATCTCCGGAGTCGGATGATGCCAAGATTGCTCCTCTTCAGTTTGAATCCTCAATTGGGCAGTTCCTTTCTCAGATTTTGAAAGATCATCCGCATCTTGTGCCTGCTGCCGTTGACCAGCAGCTCCAGCAACTCCAAACTGACCGCGATGCTCATCAACAAAACGAACAACCTTCTGCTTCAACCACTGATTTAGTTTTGTACAGGAGAATTGCTGAGGTGAAGGCTAATGAAAGGAGGAAAGCTCTGGAAGAGATCTTGTATGCATTGGTAGTGCAGAAGTTCATGGATGCTAATATTTCTTTGATACCCTCTGTAACCCCAGATCTTTCTGGTAAGGTTGATTTGTGGCCAAATGAAGATGGTAAACTTGAGCTGCTTCACTCACACGAAGCATATGAGATGATTCAAAACCACCTGGCTCTCATTCTCGGTAACAGAGCTGGAGATTTAACATCAATAGCTGAAATCAGCAAATTCAGGGTAGGGCAGGTCTACGCAGCATCAGTGATGTATGGTTATTTTCTTAGACGAGTTGACCAAAGGTTCCAGTTGGAGAAGACAATGAAAGTTCTTCCAAATGCAACAGAAAAAGAGAATAGTGCTCATCAAACTACAATGGACAATGCAAGACCCAGTATTGAAGAGGACACTTCTCAAGTGATGTCTCATCCTGAAGTATCTACCTGGCCTGGTGGTGATGTCCGTCCCGGTGGATTTGGCTATGGTGTAAAGGCAACCAGGTTGCGTAACTACGTGATGTCCTTTGATGGTGATACACTACAAAGATATGCAACAATTAGATCCAAAGAGGCTGTCAGCATCATCGAGAAGCACACAGAAGCATTGTTTGGAAGACCTGAAATTGTTGTAACACCTGAGGGGGCAGTCTCTAAGGATGAAAACATCAAAATTAGCTTTGGTGGTTTAAAGAAGCTTGTTTTAGAGGCTGTGACATTTGGTTCTTTTCTCTGGGATGTTGAGAGCTATGTGGACTCAAGGTACCATTTTGTGTTGAACTGA

Predicted protein sequences of Glyma08g06070

Limit To All Plant Sequences

>Glyma08g06070.1   sequence type=predicted peptide   gene model=Glyma08g06070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVAVTAFRSPLIILRRPVNESASARFGSTFGFSRKQRFSSVCIPKHKHKQGRRRGFVVRASASSSPESDDAKIAPLQFESSIGQFLSQILKDHPHLVPAAVDQQLQQLQTDRDAHQQNEQPSASTTDLVLYRRIAEVKANERRKALEEILYALVVQKFMDANISLIPSVTPDLSGKVDLWPNEDGKLELLHSHEAYEMIQNHLALILGNRAGDLTSIAEISKFRVGQVYAASVMYGYFLRRVDQRFQLEKTMKVLPNATEKENSAHQTTMDNARPSIEEDTSQVMSHPEVSTWPGGDVRPGGFGYGVKATRLRNYVMSFDGDTLQRYATIRSKEAVSIIEKHTEALFGRPEIVVTPEGAVSKDENIKISFGGLKKLVLEAVTFGSFLWDVESYVDSRYHFVLN*

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