Glyma08g06040 - SoyBase

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Report for Sequence Feature Glyma08g06040

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4296654
stop:	4301378
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10170	AT	Annotation by Michelle Graham. TAIR10: NF-X-like 1 \| chr1:3333925-3337491 REVERSE LENGTH=1188	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0009610	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus	SoyBase	N/A	ISS
GO:0009642	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light intensity	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0010188	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to microbial phytotoxin	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1952	KOG	Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains	JGI		ISS
PTHR12360	Panther	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1)	JGI		ISS
UniRef100_G7JH33	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcriptional repressor NF-X1 n=1 Tax=Medicago truncatula RepID=G7JH33_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338B59	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338B59 related cluster n=1 Tax=unknown RepID=UPI0002338B59	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06040

Paralog	Evidence	Comments
Glyma05g33670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g055900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g06040

Limit To All Plant Sequences

>Glyma08g06040.2   sequence type=CDS   gene model=Glyma08g06040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCGAAAGAGCGAAGCCAGCAGCCGCATTCGAGGGTTCCTCGTCGTCAGGAGTGGATTCGTAGAGATGTTGGTGGTTGCTCCAATCCAAGAAAGCCCAAGAAGGGATCATCTTCGAATTCGAGGGAGGAGTCTAATTTGCCTCAGCTGCTGCAAGAGATTCAGGACAAGCTCGTCAAAGGAGCTGTCGAATGCATGATTTGTTATGACATGGTGCGCAGGTCTGCGCCTATCTGGTCTTGCTCCGGTTGCTTCTCTATCTTTCACCTCACTTGTATCAAGAAGTGGGCTCGTGCACCCATTTCTGTGGATTTGTCCGTTGAGAAGAACCAGGGCGGCTTCAATTGGCGTTGCCCTGGTTGCCAGTCTGTGCAGCTCACTTCATCCAAGGATATTAGGTATCTATGCTTCTGTGGAAAGAGGCCAGATCCACCCTCTGATTTGTATCTCATGCCACATTCCTGTGGAGAACCATGTGGCAAGCCTCTTGAGAGGGACCTTCAAGGGGATAAGGAGCTTCTTTGCCCTCATCTTTGTGTCTTGCAATGCCATCCCGGCCCCTGTCCTCCTTGCAAAGCATTTGCCCCTCCACGTCTGTGTCCTTGTGGGAAGAAAAATATTACCACTCGTTGCTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGCCAAAAGCTTCTTCAATGTGGCCGTCATCGCTGTCAGCAAATCTGTCATCTGGGTCCTTGTCATCCTTGTCAAGTTCCAATCAATGCCTCTTGCTTTTGTGCCCAAAAGATGGAGGTAATTCTTTGTGGGGAGATGGCTGTCAAGGGTGAAATCAGAGCAGATGGTGGAGTATTCTCTTGTGGTTCCACTTGTCAAAAGAAACTTAATTGTGGTAATCATATCTGTATCGAGACTTGTCATCCAGGTAGCTGTGGGGACTGTGAATTATTACCATCCCGTATTAAGACATGCTGTTGTGGGAAAACTAGATTGGAGGAGAAACGCCACAGTTGTTTAGACCCAATTCCTACCTGTTCACAAGTATGTGGCAAGTACCTTCCTTGCGGGATTCATCATTGTGAAGAGCCATGCCATGCTGGGGATTGTTCTCCTTGTCTGGTTCTAGTTTCTCAGAAGTGTAGATGTGGCTCGACTTCCCGAACTGTGGAGTGTTGCAAGACAAAAATGGAAAATGAGAAATTTACTTGTGAAAGGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATCGATGTAGTGAAAGGTGTTGTCCACTTTCTAATCCAAATAATATTCTAAATGCAGATTGGGATCCACACTTCTGTCAATTGCCGTGTGGAAAGAAGTTAAGGTGTGGGCAGCATGCATGTGAATCCCTGTGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGTAAGACTTCAATCCCTCCTCCATTGCCTTGTGGCACACCGCCTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCTTGTTCGCATCCAGCCTCTCACAGCTGTCATTTTGGAGATTGCCCTCCTTGTTCAATGCCCATAGCAAAAGAATGTATTGGTGGACATGTAGTTCTTAGGAACATACCTTGTGGTTCGAAGGATATTAAATGCAATAAACTCTGTGGGAAGACCAGACAGTGTGGTTTACATGCATGTGGCAGAACATGTCACCTCCCCCCTTGTGATAATCTGTCAGCTGTGCCAGGTATCCGAGCCTCTTGTGGGCAAACATGTGGTGCTCCTAGGAGAGACTGCCGGCATACATGTACAGCTCCTTGTCACCCTTCAACTCCATGTCCAGATACAAGATGCAAATTCCCTGTCACAATTACTTGTTCTTGTGGCCGAATAACAGAAAATGTTCCTTGTGATGCTGGTGGCAGTTGTGCTAATTATGATGCTGATACTGTACATGAAGCTTCCATTATTCAAAAGTTGCCTGTGCTTCTTCAACCCGTGGCTGCAAATGGCAAAAAAGTCCCCCTCGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAGCGGAAAAGGGTTCTTGCAGATGCTTTTGAGATTACCGCTCCAAATCTGGATTCACTCCATTTTGGTGAGAATTCGGTTGCTTCTGAATTGCTGGCTGACATGTTGAGACGTGATTCTAAATGGGTTTTATCTGTTGAAGAGAGATGCAAGTTTTTAGTACTTGGCAAGAGCAGAGGAAATGCACATGGTCCAAAAGTCCATGTTTTCTGTCCTATGTTAAAGGACAAAAGAGATGCAGTGAGGGTGATTGCTGAGAGATGGAAGCTTGCAGTGAATGCAGCTGGTCGGGAGCCAAAGCATTTCGTAGTTGTTCATGTTACCCCAAAATCAAGAGCTCCTGCTCGTGTGCTAGGGTTTAAGGGTACTACAACTGTAAATGTACCCCTTCCTCCGGCATTTGATCCTTTGGTTGATATGGATCCTCGACTTGTTGTCTCTTTTATAGACTTACCAATGGATGCAGATATTAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCATTGGCCGTTTTTAATGACCCTGCCCGTGCTGCAACTGCAATGAGGAGGTTGGATCATGGTACGGTTTATCAGGGAGCTGTGGTGGTGGTTGTTCCAAATGTCGGGGCATCAGTAGCATCTTCAGCTACCAATGCCTGGGGAGGATCTGGGACAATGAAAGGAGGAGCACTGGCAGCATTAAAGAGTAATCCATGGAAAAAGGATGTTATTCAAGAGCCAGGTTGGAGAGAAGATGCTTGGGGTGATGAGGAGTGGGCTACTGGTTCTGCTAATGTCAAATTGCCTATTCAGAAGAAAGAAGCCCGAATATCTGCTTCAGTAAATCCTTGGAGTGTCCTAAATCAAGAATCGTCTTCAAGTTCATCTGTTGCAGCCATTAAAATTGATGGTTCTAGGAAACACTCTGAAAGTAGTGTTATCACAAAGTTGGAGCCTCGTGATGGTGGTTCAAATCTAGGAGGGCAGCCTGCAGGAAACTTTGATGCTTTGGAAGCTTCTGATGTAGTAGATGATTGGGAGAAGGCTTGTGAATAG

Predicted protein sequences of Glyma08g06040

Limit To All Plant Sequences

>Glyma08g06040.2   sequence type=predicted peptide   gene model=Glyma08g06040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKERSQQPHSRVPRRQEWIRRDVGGCSNPRKPKKGSSSNSREESNLPQLLQEIQDKLVKGAVECMICYDMVRRSAPIWSCSGCFSIFHLTCIKKWARAPISVDLSVEKNQGGFNWRCPGCQSVQLTSSKDIRYLCFCGKRPDPPSDLYLMPHSCGEPCGKPLERDLQGDKELLCPHLCVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVLTCGQRCQKLLQCGRHRCQQICHLGPCHPCQVPINASCFCAQKMEVILCGEMAVKGEIRADGGVFSCGSTCQKKLNCGNHICIETCHPGSCGDCELLPSRIKTCCCGKTRLEEKRHSCLDPIPTCSQVCGKYLPCGIHHCEEPCHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKMENEKFTCERPCGQKKNCGRHRCSERCCPLSNPNNILNADWDPHFCQLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCSHPASHSCHFGDCPPCSMPIAKECIGGHVVLRNIPCGSKDIKCNKLCGKTRQCGLHACGRTCHLPPCDNLSAVPGIRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDTRCKFPVTITCSCGRITENVPCDAGGSCANYDADTVHEASIIQKLPVLLQPVAANGKKVPLGQRKLMCNDDCAKLERKRVLADAFEITAPNLDSLHFGENSVASELLADMLRRDSKWVLSVEERCKFLVLGKSRGNAHGPKVHVFCPMLKDKRDAVRVIAERWKLAVNAAGREPKHFVVVHVTPKSRAPARVLGFKGTTTVNVPLPPAFDPLVDMDPRLVVSFIDLPMDADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVVVVVPNVGASVASSATNAWGGSGTMKGGALAALKSNPWKKDVIQEPGWREDAWGDEEWATGSANVKLPIQKKEARISASVNPWSVLNQESSSSSSVAAIKIDGSRKHSESSVITKLEPRDGGSNLGGQPAGNFDALEASDVVDDWEKACE*

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