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Report for Sequence Feature Glyma08g06031

Feature Type:gene_model
Chromosome:Gm08
Start:4292109
stop:4293445
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g06031
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G18300AT Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 4 | chr1:6299841-6300799 FORWARD LENGTH=207 SoyBaseE_val: 4.00E-68ISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG2839 KOG Diadenosine and diphosphoinositol polyphosphate phosphohydrolase JGI ISS
PTHR12629Panther DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE JGI ISS
PF00293PFAM NUDIX domain JGI ISS
UniRef100_G7KQ94UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=1 Tax=Medicago truncatula RepID=G7KQ94_MEDTR SoyBaseE_val: 1.00E-102ISS
UniRef100_I1KQM3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KQM3_SOYBN SoyBaseE_val: 4.00E-121ISS

Expression Patterns of Glyma08g06031
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g06031 not represented in the dataset
Glyma08g06031 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g06031 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g055800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g06031
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g06031
>Glyma08g06031.1   sequence type=CDS   gene model=Glyma08g06031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATGGTTATTCAATTTTGTTCCCTTTTGCCTCGCTAGCTTCATTCATTCGTACGTCATGGGTCTCTTCTTCTCAAGAAATCTGCCTTTTAATCTCTTTCTTTTCTCAAAGAAAGCCTCTGGGGATTTGTTTCCCGAGCAACTCGACAACATGATGTGTCTCGTTGCCCGCACTGGCAGGCACTTGCAGCGCTACGACGATGGTTGTCGCCAAGTTGTGGGATGCATTCCATACAGATACAAGAGAAAGGGAAGCCAAAATAAGGAATTAGAGGTTTTGGTGATTAGTGCTCAGAAAGGCAATGGAATGCAGTTCCCAAAGGGAGGTTGGGAGAGCGACGAATCCATGGAGCAGGCTGCTTTAAGGGAGACCATAGAGGAAGCTGGGGTCGTTGGCAACGTCGAAAGTAAATTGGGTAAATGGTTTTATAAGAGCAAACGCCAAGACACGATGCATGAGGGATATATGTTCCCTTTGCTTGTGAAGAAGCAATTAGAGAATTGGCCAGAGAAGAACATTCGGAAACGAACATGGATGACAATTGATGAAGCAAAACAAGCGTGTCCACATCCTTGGATGAAGGAGGCTTTGGATGTGTTGGTCAGTAGACAACCTCAATTTTGGGCGTTGCAAAGTCACACAACAGAAGGACTAACAACTAACAAGAGATCGATGCTAGAGACAGAAATTTCTAGAATGTACGTCAGAGAGAGATCTATCAACAGAACTCATTCAGTAGATGTATAA
Predicted protein sequences of Glyma08g06031
>Glyma08g06031.1   sequence type=predicted peptide   gene model=Glyma08g06031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPWLFNFVPFCLASFIHSYVMGLFFSRNLPFNLFLFSKKASGDLFPEQLDNMMCLVARTGRHLQRYDDGCRQVVGCIPYRYKRKGSQNKELEVLVISAQKGNGMQFPKGGWESDESMEQAALRETIEEAGVVGNVESKLGKWFYKSKRQDTMHEGYMFPLLVKKQLENWPEKNIRKRTWMTIDEAKQACPHPWMKEALDVLVSRQPQFWALQSHTTEGLTTNKRSMLETEISRMYVRERSINRTHSVDV*






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