Glyma08g06010 - SoyBase

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Report for Sequence Feature Glyma08g06010

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4267212
stop:	4274240
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g06010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17880	AT	Annotation by Michelle Graham. TAIR10: tetraticopeptide domain-containing thioredoxin \| chr3:6123534-6126113 FORWARD LENGTH=380	SoyBase	E_val: 6.00E-171	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0051259	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein oligomerization	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016671	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	SoyBase	N/A	ISS
GO:0030544	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Hsp70 protein binding	SoyBase	N/A	ISS
KOG0907	KOG	Thioredoxin	JGI		ISS
PTHR22904	Panther	CHAPERONE BINDING PROTEIN	JGI		ISS
PTHR22904:SF34	Panther	HSC70-INTERACTING PROTEIN	JGI		ISS
PF00085	PFAM	Thioredoxin	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_G7LE77	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin-like protein n=1 Tax=Medicago truncatula RepID=G7LE77_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQM0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQM0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g06010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g06010

Paralog	Evidence	Comments
Glyma05g33711	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g06010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g055600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g06010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g06010

Limit To All Plant Sequences

>Glyma08g06010.2   sequence type=transcript   gene model=Glyma08g06010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGCAGATAGGAACCCTAAATTGCAGTTTGACCTAGAGAGGCCGAGCGAGAGAGCGAGGGAGCATGGAGGAGGGAAAATTGAGAGAGCTGAAGCAATTCATAGAGATATGCAAGTCCAATCCCTCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATGACATTGTAGAATCTGATATAGAGTTGGATAATGCTGATGTTGTTGAACCTGATAATGACCCTCCTCAAAAGATGGGAGATCCTTCTGCTGAAATAACGGAAGAACAAAGGGATGCTGCACAACTAGCAAAATCAAAAGCAGTCGATGCTATGTCACAAGGTAATTTGGATGAAGCACTGGCCCAACTGACAGAAGCCATTTTGTTGAATCCGCAATCAGCTATACTTTATGCTACTAGAGCTAGCATCTATATGAAATTGAAGAAACCAAATGCTGCTATACGTGATGCTGACACTGCCTTGAAGATTAACCCAGACTCAGCTAAAGGCTACAAAATACGAGGAATGTCAAGGGCTATGTTGGGACTATGGGAAGAAGCAGCAAGTGACCTTCACGTGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAGGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGCTTAAGAAAGCAAAAGCAACAGAAAAGAGCTCCTATCAAGACTGAAGCTCCTATTAAGAAGGAGCAAGAAACTGAAGCCCAAGTTTTATTTTTACATCACTATTGGTATAATGGAATTGGATGGCATTTCATTCCTTCTGGAGATTCCACCTGTTCTTTGACAATTATCACACGTCTGGACATATTCATAAGCACCCTTCCACAATGTAGGCCAATAGAAACTAGACTGCTTGAGTTCAATCATTCAGGATGCTTGTTTTATGAGGATGATACTTTCTCGTAAGTCAAGGTAGTATTGTGCTAGCCAGAGATAACCTTTTCAGCATCGAGTGAAGAATTTCTTCTAATGGTATGATGAAGTAGTTTCTCAGTGTTTCCCAGTTTCCCTTTGTTCTTGTAAGATCAAAATTGGGAGGTAGGCTAAAGCCTGAGCTTGAATGCTTAAGGTCTTTCATCTCCTTGTCAGTTGAGTTACTTCATAACCTTTTCTTCTGATTCTAGTTTTAGGAACTTTCTCTATCTAAGGTGTTAGCATCACACATATCATATAGATTGTGTAGTAAGTGAAATTTCCCAAACAAAACATTAGGAAATGATGCCATCTAACTTGGTTAAGTCACGTTAGTTGTGGTTACCAGCAGAATGCCAGAGCTAATGCAGAATGACTGACCCTGCCTCCAAAGAGGAATGTTTATTCCTTGTTATATCCCATAGCTTGCTGAGACCGGAGATAGGGTCCCCTAAGATATGATGATAGTTACAATAATCTACGTTCCCCTATGGGCATATCCCAGGTTTCCATTATGATCTTAAAATAAACTATTAGACACAAAAAAGCTAAAAATTAGCTTGATTGTAATCCGAGTAACGAAGATTGATAAGCACCAGGGTTTTGAGAATTAATGGGATGGGTCAAGTTTCAAGATTGAGATGCAATTTTTAGCTGCTTTTATTTAGACATGTATTATAGCGACTTTTTAAGCCCTATGTTTTACAATCTTAACTCCTATTCCTGATTCCAAGTAAAATCTTGATTTTGGCTATCTAGTTTGTATACAACTGTTTTTTTTAATATTTATGATCACAAATATTGTTTTTGAAAATTGTGATCATCATCCAAGGGTAAAATGGATTTAGTTTCTGTAGGCTACTGTTTGTGATAACATTGAGATATGACATGGAAATCCCTCATTTCCTATGAATTCATAATTCTACTGTAGGAGTGTAGTGTCCAATTACGTTCTCCTTCCATCTTAATTTAAAAAAAAAAAAAACATTCTTCTTCCATCTTGATTAAAATGCTATATGTTGTGACAAGTTGTTGGCTCTCACTATGCACCTGAAAAACAATGCTATGAGATGATCTAATTATAGCTGTTTTTTTTTTCAGGTACAAGCAGCATTATCTGCTTTAAAAGATGGGCAAGTCATGGGTATTCACTCTAGTGGTGAATTGGAAAAGAAGTTAAGTGCTGCATCAAAGACATCACGCTTGGCGATCCTGTATTTTACTGCAACATGGTGTGGCCCTTGTCGCTTCATTTCCCCTATTTATACAAGCTTGGCTGAAAAGTACCCAAAAGTGGTTTTTTTGAAAGTTGACATAGATGAGGCCAGGGACGTTGCTGCAGGTTGGAATATTAGCAGTGTTCCGACATTTTTCTTTGTTAAGAATGGCAAAGAGGTTGACAGTGTGGTCGGGGCAGACAAAAGTACACTTGAAAGCAAGATTGCACAACATGCTGGCTCTCTTTAAGTGAATACCTTATAAAAACCCTGATACAATTAACATTTTCTTGTTTCTTGTTTTAACATGTCCATAGTGTCATACAAAGGCAAAAGATCAAATTGAGTTACAATGTGTTATGGCTTGGCGTTTCCTCTGTCTGGTTGCATGTACAAAATGTTGTATTGATTTGTAATAAGTTTCATATTTTCAAGCCGATTTTATGTTTGTGATGTGGCTGTAATTAGGGGTGGAAATGAGTCAAGTCAAGCCAAGTTTTACTAGGTTTGAACTTGGTTTGAGTTGAATACGTAAGGTTTGAGCTTGACTCATTACTTGTCATAGGTTTTTTTTTAAGGCTCGGCTTGACTTATATAAAAGTCTGGTTTGGCCCACGAGCCTATTTAAAAGCCTGCTTAAAGATGTTTTTGATTAATTATTTTAAAACTTAATGAAATATTAACTAAAAAAAG

Coding sequences of Glyma08g06010

Limit To All Plant Sequences

>Glyma08g06010.1   sequence type=CDS   gene model=Glyma08g06010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGGAAAATTGAGAGAGCTGAAGCAATTCATAGAGATATGCAAGTCCAATCCCTCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATGACATTGTAGAATCTGATATAGAGTTGGATAATGCTGATGTTGTTGAACCTGATAATGACCCTCCTCAAAAGATGGGAGATCCTTCTGCTGAAATAACGGAAGAACAAAGGGATGCTGCACAACTAGCAAAATCAAAAGCAGTCGATGCTATGTCACAAGGTAATTTGGATGAAGCACTGGCCCAACTGACAGAAGCCATTTTGTTGAATCCGCAATCAGCTATACTTTATGCTACTAGAGCTAGCATCTATATGAAATTGAAGAAACCAAATGCTGCTATACGTGATGCTGACACTGCCTTGAAGATTAACCCAGACTCAGCTAAAGGCTACAAAATACGAGGAATGTCAAGGGCTATGTTGGGACTATGGGAAGAAGCAGCAAGTGACCTTCACGTGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAGGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGCTTAAGAAAGCAAAAGCAACAGAAAAGAGCTCCTATCAAGACTGAAGCTCCTATTAAGAAGGAGCAAGAAACTGAAGCCCAAGTACAAGCAGCATTATCTGCTTTAAAAGATGGGCAAGTCATGGGTATTCACTCTAGTGGTGAATTGGAAAAGAAGTTAAGTGCTGCATCAAAGACATCACGCTTGGCGATCCTGTATTTTACTGCAACATGGTGTGGCCCTTGTCGCTTCATTTCCCCTATTTATACAAGCTTGGCTGAAAAGTACCCAAAAGTGGTTTTTTTGAAAGTTGACATAGATGAGGCCAGGGACGTTGCTGCAGGTTGGAATATTAGCAGTGTTCCGACATTTTTCTTTGTTAAGAATGGCAAAGAGGTTGACAGTGTGGTCGGGGCAGACAAAAGTACACTTGAAAGCAAGATTGCACAACATGCTGGCTCTCTTTAA

>Glyma08g06010.2   sequence type=CDS   gene model=Glyma08g06010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGGAAAATTGAGAGAGCTGAAGCAATTCATAGAGATATGCAAGTCCAATCCCTCACTTCTCCACAATCCATCTCTTTCATTCTTCAAGACTTATCTTCTCAGCCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATGACATTGTAGAATCTGATATAGAGTTGGATAATGCTGATGTTGTTGAACCTGATAATGACCCTCCTCAAAAGATGGGAGATCCTTCTGCTGAAATAACGGAAGAACAAAGGGATGCTGCACAACTAGCAAAATCAAAAGCAGTCGATGCTATGTCACAAGGTAATTTGGATGAAGCACTGGCCCAACTGACAGAAGCCATTTTGTTGAATCCGCAATCAGCTATACTTTATGCTACTAGAGCTAGCATCTATATGAAATTGAAGAAACCAAATGCTGCTATACGTGATGCTGACACTGCCTTGAAGATTAACCCAGACTCAGCTAAAGGCTACAAAATACGAGGAATGTCAAGGGCTATGTTGGGACTATGGGAAGAAGCAGCAAGTGACCTTCACGTGGCTTCAAAGTTAGATTACGATGAAGAGATTAGTATGGCACTTAAAAAGGTTGAACCTAATGCCCTTAAAATCGAGGAGCATAGGAGAAAATATGAACGCTTAAGAAAGCAAAAGCAACAGAAAAGAGCTCCTATCAAGACTGAAGCTCCTATTAAGAAGGAGCAAGAAACTGAAGCCCAAGTTTTATTTTTACATCACTATTGGTATAATGGAATTGGATGGCATTTCATTCCTTCTGGAGATTCCACCTGTTCTTTGACAATTATCACACGTCTGGACATATTCATAAGCACCCTTCCACAATGTAGGCCAATAGAAACTAGACTGCTTGAGTTCAATCATTCAGGATGCTTGTTTTATGAGGATGATACTTTCTCGTAA

Predicted protein sequences of Glyma08g06010

Limit To All Plant Sequences

>Glyma08g06010.1   sequence type=predicted peptide   gene model=Glyma08g06010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEGKLRELKQFIEICKSNPSLLHNPSLSFFKTYLLSLGARIPPQPKTEPGDFDDKSDPPLSAQNDIVESDIELDNADVVEPDNDPPQKMGDPSAEITEEQRDAAQLAKSKAVDAMSQGNLDEALAQLTEAILLNPQSAILYATRASIYMKLKKPNAAIRDADTALKINPDSAKGYKIRGMSRAMLGLWEEAASDLHVASKLDYDEEISMALKKVEPNALKIEEHRRKYERLRKQKQQKRAPIKTEAPIKKEQETEAQVQAALSALKDGQVMGIHSSGELEKKLSAASKTSRLAILYFTATWCGPCRFISPIYTSLAEKYPKVVFLKVDIDEARDVAAGWNISSVPTFFFVKNGKEVDSVVGADKSTLESKIAQHAGSL*

>Glyma08g06010.2   sequence type=predicted peptide   gene model=Glyma08g06010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEGKLRELKQFIEICKSNPSLLHNPSLSFFKTYLLSLGARIPPQPKTEPGDFDDKSDPPLSAQNDIVESDIELDNADVVEPDNDPPQKMGDPSAEITEEQRDAAQLAKSKAVDAMSQGNLDEALAQLTEAILLNPQSAILYATRASIYMKLKKPNAAIRDADTALKINPDSAKGYKIRGMSRAMLGLWEEAASDLHVASKLDYDEEISMALKKVEPNALKIEEHRRKYERLRKQKQQKRAPIKTEAPIKKEQETEAQVLFLHHYWYNGIGWHFIPSGDSTCSLTIITRLDIFISTLPQCRPIETRLLEFNHSGCLFYEDDTFS*

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