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Report for Sequence Feature Glyma08g05970
Feature Type: gene_model
Chromosome: Gm08
Start: 4243914
stop: 4246988
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g05970
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G17930 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3007 (InterPro:IPR021562); Has 236 Blast hits to 236 proteins in 83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:6142307-6143246 REVE
SoyBase E_val: 6.00E-63 ISS
GO:0000023 GO-bp
Annotation by Michelle Graham. GO Biological Process: maltose metabolic process
SoyBase N/A ISS
GO:0006098 GO-bp
Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt
SoyBase N/A ISS
GO:0009902 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast relocation
SoyBase N/A ISS
GO:0010027 GO-bp
Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization
SoyBase N/A ISS
GO:0010190 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytochrome b6f complex assembly
SoyBase N/A ISS
GO:0010207 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosystem II assembly
SoyBase N/A ISS
GO:0019252 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process
SoyBase N/A ISS
GO:0034660 GO-bp
Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process
SoyBase N/A ISS
GO:0043085 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009535 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF11460 PFAM
Protein of unknown function (DUF3007)
JGI ISS
UniRef100_I1KQL7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQL7_SOYBN
SoyBase E_val: 7.00E-146 ISS
UniRef100_Q9LVH7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Dbj|BAA18124.1 n=2 Tax=Arabidopsis RepID=Q9LVH7_ARATH
SoyBase E_val: 3.00E-61 ISS
Expression Patterns of Glyma08g05970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g05970
Paralog Evidence Comments
Glyma05g33750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g05970 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g055300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g05970
Transcripts of Glyma08g05970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g05970.2 sequence type=transcript gene model=Glyma08g05970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAACTAATGACTAAAGGACACGTATGGAGGAACAAGAATTAACGACACGTTTGAACATGGAACAACCTCATCTCCAACGAATTAACGTTCTCCACTCGTCCCTGCTTATTCTTCTCCTTCCACAGGAATGGCTTATGTTCCACATGGAAATGCAAATTTCAACTCTTTATTCCTAAAATTTGCAATTTCTCATGTGGGTATTTCTTCTTTGCCCTTCTTGCACCCGGGACTGAAATCTTGTACAGTCTTCAACAGAGGAACACTCATTCGCCAGTGTTTAAATGGAAAGCGGAATTTTTCTCTATCAGAAAAGCGATTTAATTGCAAGTTTTCAAAGAAAGACAGATTCTTTATCCCTAGAAGTAGTAGTTCTTCTAACTCTAGTGGAAGTACGGATGAACCCTCTAATGAGACAGAGAAGACACCATTTGGATATACAAGGAAAGATGTCCTATTAATTGGACTTGGAGTTACTTTACTTGGCATTGGCTTAAAAAGTGGACTGGAGTTTGTTGGAGTTGACTCACTGCAAGCAGGAAATGTAGTTCAGCTAGTGCTGGTTTTGGGCCTTACAGTTGGGTGGATCTCAACATATATCTTCAGAGTTTCAAACAAGGAAATGACATATGCACAGCAACTACGTGATTATGAAAGCAAAGTGATGGAGAAGCGGTTAGAGTCCTTAACAGAAGCAGAGCTACAAGCACTGCTTGAAGAAGTTGAGGAAGAGAAGAGTCGCTAGCTAGTGGTACACAGGTGAATTGGAGTAGCTTGTTTGTATATATACACTGAAATGAAGTTTTGCCAAAGTAATTGAAACAGAAATTTCAACCTATATGGACTACTAGTTCTGAAAGATTTTAGTGATGCTTTCTTTAGTTTACTCCAGACAAAAGGGTGAGACTTCAAAATCCTTAGTGTTCTGTTCACAAAAAATTCCAGATGGAAGCAACTCTGTAAGATATGATGATAATGCTTCTTTTAAATTCATATAATTTTGTGACTTTTCTTGGAGCCGTTCACCACTGTTCTATAATACTATGATGAATAATGTTGAAGGTACCGTTGGAACTTGGCCTACAACCATTTTCCTCATAACCTGAGTTTTTAAATAGTTTACTTGTTGTTCTTATGTTCCCTAGCTCCTTGAGAAACGAATTGCATGTCCTTTAGGTACACAACTACCAACAACTCATTGTGACCACTTATTTGGTCATTTGTGAATCTTATCAATATGTGATCTGCACTGCCCTCTAGTTGAAGCATTTGTTTACAAAATAAAT
Coding sequences of Glyma08g05970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g05970.1 sequence type=CDS gene model=Glyma08g05970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTATGTTCCACATGGAAATGCAAATTTCAACTCTTTATTCCTAAAATTTGCAATTTCTCATGTGGGTATTTCTTCTTTGCCCTTCTTGCACCCGGGACTGAAATCTTGTACAGTCTTCAACAGAGGAACACTCATTCGCCAGTGTTTAAATGGAAAGCGGAATTTTTCTCTATCAGAAAAGCGATTTAATTGCAAGTTTTCAAAGAAAGACAGATTCTTTATCCCTAGAAGTAGTAGTTCTTCTAACTCTAGTGGAAGTACGGATGAACCCTCTAATGAGACAGAGAAGACACCATTTGGATATACAAGGAAAGATGTCCTATTAATTGGACTTGGAGTTACTTTACTTGGCATTGGCTTAAAAAGTGGACTGGAGTTTGTTGGAGTTGACTCACTGCAAGCAGGAAATGTAGTTCAGCTAGTGCTGGTTTTGGGCCTTACAGTTGGGTGGATCTCAACATATATCTTCAGAGTTTCAAACAAGGAAATGACATATGCACAGCAACTACGTGATTATGAAAGCAAAGTGATGGAGAAGCGGTTAGAGTCCTTAACAGAAGCAGAGCTACAAGCACTGCTTGAAGAAGTTGAGGAAGAGAAGAGTCGCTAG
>Glyma08g05970.2 sequence type=CDS gene model=Glyma08g05970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTATGTTCCACATGGAAATGCAAATTTCAACTCTTTATTCCTAAAATTTGCAATTTCTCATGTGGGTATTTCTTCTTTGCCCTTCTTGCACCCGGGACTGAAATCTTGTACAGTCTTCAACAGAGGAACACTCATTCGCCAGTGTTTAAATGGAAAGCGGAATTTTTCTCTATCAGAAAAGCGATTTAATTGCAAGTTTTCAAAGAAAGACAGATTCTTTATCCCTAGAAGTAGTAGTTCTTCTAACTCTAGTGGAAGTACGGATGAACCCTCTAATGAGACAGAGAAGACACCATTTGGATATACAAGGAAAGATGTCCTATTAATTGGACTTGGAGTTACTTTACTTGGCATTGGCTTAAAAAGTGGACTGGAGTTTGTTGGAGTTGACTCACTGCAAGCAGGAAATGTAGTTCAGCTAGTGCTGGTTTTGGGCCTTACAGTTGGGTGGATCTCAACATATATCTTCAGAGTTTCAAACAAGGAAATGACATATGCACAGCAACTACGTGATTATGAAAGCAAAGTGATGGAGAAGCGGTTAGAGTCCTTAACAGAAGCAGAGCTACAAGCACTGCTTGAAGAAGTTGAGGAAGAGAAGAGTCGCTAG
Predicted protein sequences of Glyma08g05970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g05970.1 sequence type=predicted peptide gene model=Glyma08g05970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAYVPHGNANFNSLFLKFAISHVGISSLPFLHPGLKSCTVFNRGTLIRQCLNGKRNFSLSEKRFNCKFSKKDRFFIPRSSSSSNSSGSTDEPSNETEKTPFGYTRKDVLLIGLGVTLLGIGLKSGLEFVGVDSLQAGNVVQLVLVLGLTVGWISTYIFRVSNKEMTYAQQLRDYESKVMEKRLESLTEAELQALLEEVEEEKSR*
>Glyma08g05970.2 sequence type=predicted peptide gene model=Glyma08g05970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAYVPHGNANFNSLFLKFAISHVGISSLPFLHPGLKSCTVFNRGTLIRQCLNGKRNFSLSEKRFNCKFSKKDRFFIPRSSSSSNSSGSTDEPSNETEKTPFGYTRKDVLLIGLGVTLLGIGLKSGLEFVGVDSLQAGNVVQLVLVLGLTVGWISTYIFRVSNKEMTYAQQLRDYESKVMEKRLESLTEAELQALLEEVEEEKSR*