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Report for Sequence Feature Glyma08g05960

Feature Type:gene_model
Chromosome:Gm08
Start:4240693
stop:4241538
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g05960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G18290AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: root; Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6297436-6297966 FORWARD LENGTH=176 SoyBaseE_val: 2.00E-32ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C6TJR4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJR4_SOYBN SoyBaseE_val: 5.00E-121ISS
UniRef100_Q9LE02UniRef Annotation by Michelle Graham. Most informative UniRef hit: F15H18.19 n=1 Tax=Arabidopsis thaliana RepID=Q9LE02_ARATH SoyBaseE_val: 7.00E-30ISS

Expression Patterns of Glyma08g05960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05960
ParalogEvidenceComments
Glyma05g33760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g055200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g05960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g05960
>Glyma08g05960.1   sequence type=CDS   gene model=Glyma08g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAATGCAGCTTCATGCACTCCTTCCTTGATATCTAATAATGGGGTCTTGAAGATCCTATTATCAGATGGGAGGTTAGAGGCCTACAAAAAACCAATGAGAGCTGCAGAACTGATGCTAGAATACCCTGGACAGTTTGTTTGTGACTCTTGCTACCTCAAAGTGGGACACCGCATTCATGGGCTCCTAGCTGATGACCAACTTGAAAGGCGCAAGTTTTACTTCCTTCTACCAATGGAGCTGCTCTACTCTGTGCTAACCCATGAAGAAATGAGCTCTCTTAATTACAAAGCATCCAGGGCAACCAAGCACGCAACTTTTAACAACTTGGGAAAGATTTTTCCAGTCTTTAGTGAACTTTGTATGTTCCCTTCCGAGCTTAAGAGATTAGAAGAAGCTGATAATCAGCTTCAGTTGGTAAGGGAGCCAGAACCACCTGTCCAAAGGTACTCCAAGCAGAGATCTTGGAGACCGGCACTGGAGACCGTTGATGAAACTCTCTGA
Predicted protein sequences of Glyma08g05960
>Glyma08g05960.1   sequence type=predicted peptide   gene model=Glyma08g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNAASCTPSLISNNGVLKILLSDGRLEAYKKPMRAAELMLEYPGQFVCDSCYLKVGHRIHGLLADDQLERRKFYFLLPMELLYSVLTHEEMSSLNYKASRATKHATFNNLGKIFPVFSELCMFPSELKRLEEADNQLQLVREPEPPVQRYSKQRSWRPALETVDETL*






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