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Report for Sequence Feature Glyma08g05950

Feature Type:gene_model
Chromosome:Gm08
Start:4236790
stop:4237897
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g05950
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G17950AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6146311-6147169 FORWARD LENGTH=211 SoyBaseE_val: 6.00E-41ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1KQL5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQL5_SOYBN SoyBaseE_val: 3.00E-129ISS

Expression Patterns of Glyma08g05950
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g05950 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g055100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g05950
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g05950
>Glyma08g05950.1   sequence type=CDS   gene model=Glyma08g05950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGATCCAGCTACTGAATTGGTGCCACCACCATCTTCACCCACCAATTCATCCATTTCCTCCTCTGATCTTGACACCGAGTCTACGGGATCCTTTTTCCATGACAGAAGCACCACACTGGGCACTCTTATGGGTGTCAGCTTCCCAGCTATTACCTTCAGAGCCTCCGACCCCCATCCAAATTCCGCCACCGCCACCGCCACCGCTGCTGCCGGAGGCCCTCGTAGGGCTGCGGGCTCCAAGAAGAAGAGGGCGATCGCGGTGGCGGAGAGGCGGAGGAGGTGGTGGTGGCTGTGCAGGGACGGTGACGCGAGGCCGGCTTCGCTCGGTGAGTTTCTCGAGGTGGAACGGCGCTGCGGGGACGGCGCCTTTTACGGCACGGCGGCGGAACTCGAAGGAATGGTGATGGACCCGCAGAGTAGCCATGGCCGGGCTTTGTTTTCCGACGGGAGGGTTCTTCCGCCGGCTGGCGTTGATGACGATGCGTCGACGGCGGGGAGTCTTTGTCGTAGATTCCCGGTTTTGCTCACCGGGATCTGTAGCGGCGGTGCTGGATAA
Predicted protein sequences of Glyma08g05950
>Glyma08g05950.1   sequence type=predicted peptide   gene model=Glyma08g05950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDPATELVPPPSSPTNSSISSSDLDTESTGSFFHDRSTTLGTLMGVSFPAITFRASDPHPNSATATATAAAGGPRRAAGSKKKRAIAVAERRRRWWWLCRDGDARPASLGEFLEVERRCGDGAFYGTAAELEGMVMDPQSSHGRALFSDGRVLPPAGVDDDASTAGSLCRRFPVLLTGICSGGAG*






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