Glyma08g05940 - SoyBase

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Report for Sequence Feature Glyma08g05940

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4233177
stop:	4234661
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67940	AT	Annotation by Michelle Graham. TAIR10: non-intrinsic ABC protein 3 \| chr1:25477805-25478667 FORWARD LENGTH=263	SoyBase	E_val: 9.00E-129	ISS
GO:0035435	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion transmembrane transport	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005315	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic phosphate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG2355	KOG	Predicted ABC-type transport, ATPase component/CCR4 associated factor	JGI		ISS
PTHR24220	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24220:SF24	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
UniRef100_Q9SXT3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance protein (Fragment) n=1 Tax=Cicer arietinum RepID=Q9SXT3_CICAR	SoyBase	E_val: 8.00E-143	ISS
UniRef100_UPI0001B83730	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001B83730 related cluster n=1 Tax=unknown RepID=UPI0001B83730	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g05940 not represented in the dataset	Glyma08g05940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g05940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g055000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g05940

Limit To All Plant Sequences

>Glyma08g05940.2   sequence type=transcript   gene model=Glyma08g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAGACGAAAATGAGCTGTTTTTAAAATAGTATCATATTGTAAATATAAAAATGATTTATGTGGGGGAGGAGTGATCCAGAGGAAGAATCTGACATGACCGAGGCAGGCTGTTTCTGGTTTCAACTTGTTATGATGGTGTCATCTTCTCCATTCTCATTCTCATTCTCTGTCGCTCACGGCTAGCAATCATGTCTTCTCGCTTAGATGAGTGCTTGTTGGAGGTGGATGGGTACGGTGATGGCGATGGAAAGGCGAAACCCAAATTCCTGATAAGGAATCTCAGCAGAGTTTCGGAGGATGGGGTTCCCATCCTCAAAGGCATAAATCTTGAGATCCCAGAGGGTGTGATCGTGGGAGTGATAGGCCCCAGTGGTAGCGGCAAGTCAACGTTCTTGAGGGCCCTTAACCGCCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGCCCAAGACATCTGCCATCTCGATGTCCTCTCTCTCCGCCGTAACGTTGCCATGCTCTTTCAGCTCCCGGCCCTCTTTGAAGGCAGCGTTGCGGACAATGTGAGGTACGGACCACAACTCAGAGGGAAAAAGCTAAGCGATGATGAGGTGCGCAAGTTGCTTCTAATGGCCGACCTGGATGCTTCTTTCATGGATAAGTCCGGGGCTGAACTCTCTGTCGGTCAAGCTCAAAGAGTTGCACTTGCTAGGACTTTAGCTAATTCACCCCAGGTAACTTAATTATAACATAACATCCATCTCTTTTAACATTTTCTGTTTATTCATTTGTATGTTTTTTAATTTAAAGGTTTTGTTGCTGGATGAGCCAACTAGTGCCTTAGATCCAATATCGACAGAAAACATAGAGGATGCCCTGGTGAAGCTGAACAAGAATCAGGGCATGACAGTCATCATGGTCTCTCATAGCATCAAGCAAATCCAAAGGATCGCTCACATAGTGTGCCTGCTTGTTGATGGTGAAATTGTTGAAGTTCTCAACCCTCATAATCTCTCTCAGGCCAACCATCCCATGGCTAAGAGGTTTCTTCAACTCAGTTCTTAAAGCCAAGATAAATCTACTTGCACCTGCTCGTTTATCGGCCACATATATATGTTCACCTCTCCTCGATTCATATCTTTCAATCAATTATCTTCCACATATGTTGCTTTAATTTCAAGACGTGCAGGTTGATGACATATATATGATTTTATGATAGTGGAGGTTTAGTTACCAATATGATATTGCAAAATGCTACTATAGAATAGGAATTTCGTTTTTCACCAAAACAAAACTATTGTCCACAGTTTTTTCTATTTGCAATACAACCAATTGGATGTAAGCGTACTCTTTGGTACAAGTTTCGTGAAGAAAGTTCTCGTCCCACTAATCCCGGATCAGAAACCATACAATAAA

>Glyma08g05940.3   sequence type=transcript   gene model=Glyma08g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAGACGAAAATGAGCTGTTTTTAAAATAGTATCATATTGTAAATATAAAAATGATTTATGTGGGGGAGGAGTGATCCAGAGGAAGAATCTGACATGACCGAGGCAGGCTGTTTCTGGTTTCAACTTGTTATGATGGTGTCATCTTCTCCATTCTCATTCTCATTCTCTGTCGCTCACGGCTAGCAATCATGTCTTCTCGCTTAGATGAGTGCTTGTTGGAGGTGGATGGGTACGGTGATGGCGATGGAAAGGCGAAACCCAAATTCCTGATAAGGAATCTCAGCAGAGTTTCGGAGGATGGGGTTCCCATCCTCAAAGGCATAAATCTTGAGATCCCAGAGGGTGTGATCGTGGGAGTGATAGGCCCCAGTGGTAGCGGCAAGTCAACGTTCTTGAGGGCCCTTAACCGCCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGCCCAAGACATCTGCCATCTCGATGTCCTCTCTCTCCGCCGTAACGTTGCCATGCTCTTTCAGCTCCCGGCCCTCTTTGAAGGCAGCGTTGCGGACAATGTGAGGTACGGACCACAACTCAGAGGGAAAAAGCTAAGCGATGATGAGGTGCGCAAGTTGCTTCTAATGGCCGACCTGGATGCTTCTTTCATGGATAAGTCCGGGGCTGAACTCTCTGTCGGTCAAGCTCAAAGAGTTGCACTTGCTAGGACTTTAGCTAATTCACCCCAGTGCCTTAGATCCAATATCGACAGAAAACATAGAGGATGCCCTGGTGAAGCTGAACAAGAATCAGGGCATGACAGTCATCATGGTCTCTCATAGCATCAAGCAAATCCAAAGGATCGCTCACATAGTGTGCCTGCTTGTTGATGGTGAAATTGTTGAAGTTCTCAACCCTCATAATCTCTCTCAGGCCAACCATCCCATGGCTAAGAGGTTTCTTCAACTCAGTTCTTAAAGCCAAGATAAATCTACTTGCACCTGCTCGTTTATCGGCCACATATATATGTTCACCTCTCCTCGATTCATATCTTTCAATCAATTATCTTCCACATATGTTGCTTTAATTTCAAGACGTGCAGGTTGATGACATATATATGATTTTATGATAGTGGAGGTTTAGTTACCAATATGATATTGCAAAATGCTACTATAGAATAGGAATTTCGTTTTTCACCAAAACAAAACTATTGTCCACAGTTTTTTCTATTTGCAATACAACCAATTGGATGTAAGCGTACTCTTTGGTACAAGTTTCGTGAAGAAAGTTCTCGTCCCACTAATCCCGGATCAGAAACCATACAATAAA

Coding sequences of Glyma08g05940

Limit To All Plant Sequences

>Glyma08g05940.1   sequence type=CDS   gene model=Glyma08g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTCGCTTAGATGAGTGCTTGTTGGAGGTGGATGGGTACGGTGATGGCGATGGAAAGGCGAAACCCAAATTCCTGATAAGGAATCTCAGCAGAGTTTCGGAGGATGGGGTTCCCATCCTCAAAGGCATAAATCTTGAGATCCCAGAGGGTGTGATCGTGGGAGTGATAGGCCCCAGTGGTAGCGGCAAGTCAACGTTCTTGAGGGCCCTTAACCGCCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGCCCAAGACATCTGCCATCTCGATGTCCTCTCTCTCCGCCGTAACGTTGCCATGCTCTTTCAGCTCCCGGCCCTCTTTGAAGGCAGCGTTGCGGACAATGTGAGGTACGGACCACAACTCAGAGGGAAAAAGCTAAGCGATGATGAGGTGCGCAAGTTGCTTCTAATGGCCGACCTGGATGCTTCTTTCATGGATAAGTCCGGGGCTGAACTCTCTGTCGGTCAAGCTCAAAGAGTTGCACTTGCTAGGACTTTAGCTAATTCACCCCAGGTTTTGTTGCTGGATGAGCCAACTAGTGCCTTAGATCCAATATCGACAGAAAACATAGAGGATGCCCTGGTGAAGCTGAACAAGAATCAGGGCATGACAGTCATCATGGTCTCTCATAGCATCAAGCAAATCCAAAGGATCGCTCACATAGTGTGCCTGCTTGTTGATGGTGAAATTGTTGAAGTTCTCAACCCTCATAATCTCTCTCAGGCCAACCATCCCATGGCTAAGAGGTTTCTTCAACTCAGTTCTTAA

>Glyma08g05940.2   sequence type=CDS   gene model=Glyma08g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTCGCTTAGATGAGTGCTTGTTGGAGGTGGATGGGTACGGTGATGGCGATGGAAAGGCGAAACCCAAATTCCTGATAAGGAATCTCAGCAGAGTTTCGGAGGATGGGGTTCCCATCCTCAAAGGCATAAATCTTGAGATCCCAGAGGGTGTGATCGTGGGAGTGATAGGCCCCAGTGGTAGCGGCAAGTCAACGTTCTTGAGGGCCCTTAACCGCCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGCCCAAGACATCTGCCATCTCGATGTCCTCTCTCTCCGCCGTAACGTTGCCATGCTCTTTCAGCTCCCGGCCCTCTTTGAAGGCAGCGTTGCGGACAATGTGAGGTACGGACCACAACTCAGAGGGAAAAAGCTAAGCGATGATGAGGTGCGCAAGTTGCTTCTAATGGCCGACCTGGATGCTTCTTTCATGGATAAGTCCGGGGCTGAACTCTCTGTCGGTCAAGCTCAAAGAGTTGCACTTGCTAGGACTTTAGCTAATTCACCCCAGGTAACTTAA

>Glyma08g05940.3   sequence type=CDS   gene model=Glyma08g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTCGCTTAGATGAGTGCTTGTTGGAGGTGGATGGGTACGGTGATGGCGATGGAAAGGCGAAACCCAAATTCCTGATAAGGAATCTCAGCAGAGTTTCGGAGGATGGGGTTCCCATCCTCAAAGGCATAAATCTTGAGATCCCAGAGGGTGTGATCGTGGGAGTGATAGGCCCCAGTGGTAGCGGCAAGTCAACGTTCTTGAGGGCCCTTAACCGCCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGCCCAAGACATCTGCCATCTCGATGTCCTCTCTCTCCGCCGTAACGTTGCCATGCTCTTTCAGCTCCCGGCCCTCTTTGAAGGCAGCGTTGCGGACAATGTGAGGTACGGACCACAACTCAGAGGGAAAAAGCTAAGCGATGATGAGGTGCGCAAGTTGCTTCTAATGGCCGACCTGGATGCTTCTTTCATGGATAAGTCCGGGGCTGAACTCTCTGTCGGTCAAGCTCAAAGAGTTGCACTTGCTAGGACTTTAGCTAATTCACCCCAGTGCCTTAGATCCAATATCGACAGAAAACATAGAGGATGCCCTGGTGAAGCTGAACAAGAATCAGGGCATGACAGTCATCATGGTCTCTCATAG

Predicted protein sequences of Glyma08g05940

Limit To All Plant Sequences

>Glyma08g05940.1   sequence type=predicted peptide   gene model=Glyma08g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRLDECLLEVDGYGDGDGKAKPKFLIRNLSRVSEDGVPILKGINLEIPEGVIVGVIGPSGSGKSTFLRALNRLWEPPSASVFLDAQDICHLDVLSLRRNVAMLFQLPALFEGSVADNVRYGPQLRGKKLSDDEVRKLLLMADLDASFMDKSGAELSVGQAQRVALARTLANSPQVLLLDEPTSALDPISTENIEDALVKLNKNQGMTVIMVSHSIKQIQRIAHIVCLLVDGEIVEVLNPHNLSQANHPMAKRFLQLSS*

>Glyma08g05940.2   sequence type=predicted peptide   gene model=Glyma08g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRLDECLLEVDGYGDGDGKAKPKFLIRNLSRVSEDGVPILKGINLEIPEGVIVGVIGPSGSGKSTFLRALNRLWEPPSASVFLDAQDICHLDVLSLRRNVAMLFQLPALFEGSVADNVRYGPQLRGKKLSDDEVRKLLLMADLDASFMDKSGAELSVGQAQRVALARTLANSPQVT*

>Glyma08g05940.3   sequence type=predicted peptide   gene model=Glyma08g05940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRLDECLLEVDGYGDGDGKAKPKFLIRNLSRVSEDGVPILKGINLEIPEGVIVGVIGPSGSGKSTFLRALNRLWEPPSASVFLDAQDICHLDVLSLRRNVAMLFQLPALFEGSVADNVRYGPQLRGKKLSDDEVRKLLLMADLDASFMDKSGAELSVGQAQRVALARTLANSPQCLRSNIDRKHRGCPGEAEQESGHDSHHGLS*

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