Glyma08g05930 - SoyBase

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Report for Sequence Feature Glyma08g05930

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4229408
stop:	4232666
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18260	AT	Annotation by Michelle Graham. TAIR10: HCP-like superfamily protein \| chr1:6279047-6282008 REVERSE LENGTH=678	SoyBase	E_val: 0	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0030433	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER-associated protein catabolic process	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG1550	KOG	Extracellular protein SEL-1 and related proteins	JGI		ISS
PTHR11102	Panther	SEL-1-LIKE PROTEINS	JGI		ISS
PTHR11102:SF11	Panther	SEL1L	JGI		ISS
PF08238	PFAM	Sel1 repeat	JGI		ISS
UniRef100_I1KQL1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQL1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q4R1J3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SEL-1 n=1 Tax=Glycine max RepID=Q4R1J3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05930

Paralog	Evidence	Comments
Glyma05g33770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g054900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g05930

Limit To All Plant Sequences

>Glyma08g05930.2   sequence type=transcript   gene model=Glyma08g05930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGAGCCGAAAACGTGGCAAGCGAAGTTGAAGATTATAATTGCAATAATACCCCTAGCATTGCATTTCCCATTCTGTTCGCGATTCCGATTGTTGTGATCCGTACAACACAGCACAACACCATGGCTGGCCCCAACCCCATCCCCAAGTGGTTGTTTCTCTCTCTGACTCTGATCCTCAGTCTCTCTGTCTCCGTCGGCGCCCGCCACTTCGTCCTCGTCCTCTCCCAGGAAGACTACAAGGACGACCCCCCCGCCGATCCCGACTCCGCCGCCGAGTGGGACGAGTTCGGCGACGGAGACTCCCACAAATCCGAGGACGACCTCGACCCCGGCTCATGGCGCCCCATCTTCGAGCCCCCCGCCGGAGATCCCCAACCCCTCCCCGAATCCGACGCCGCCTACCACTCCGCCGTCCACAAGCTCATGTCCGGCGACCCCGACCTGATCCAGGACGGCGCCGCCGAGATCGGCGCCTTGGCCGAGACCGGGCACCCCGCGTCTCAATCGGTGCTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGGGAGCGAAGCAAGGGGAAGGCCTTTCTGTACCACCACTTTGCCGCGGAGGGTGGCAACATGCAATCGAAGATGGCATTGGCATACAGCTACACGAGGCAGGACATGTTCGACAAAGGTGTAAATCTGTATGGCGAATTAGCCGAAGTGGCCGTGAACAGCTTTCTGATATCGAAGGAGTCTCCTGTGATTGAGGCGGTTAGGCTTCACAACGGGGCAGAGGAGAACAAGGAGGCTCTTAGAAAATCCAAGGGTGAAGAGGACGAGGACTTTCAGATACTTGAGTACCAGGCCCAGAAAGGGAATGCTGCTGCCATGTACAAAGTTGGTCTCTTTTACTACTTTGGCCTCAGGGGTTTGAGGCGTGACCATTCCAAGGCCCTCTGGTGGTTCCTCAAGGCCGTGGACAAGGGAGAGCCTCGATCCATGGAGCTTCTTGGAGAGATCTATGCGAGAGGAGCAGGTGTGGAGAGAAACTACACCAAGGCCTTCGAGTGGCTCACCCTTGCTTCCAGGCACCACCTCTATTCTGCCTACAATGGGATGGGGTATTTGTACGTCAAAGGCTATGGAGTTGACCAGAAGAACTACACCAAGGCCAAAGAGTATTTTGAGAAGGCTGCTGATAATGACGAGGTTGGCGGCCACTATAACCTTGGCGTCATGTATCTCAAGGGGATTGGAGTCAATAGGGATGTTAAGCTCGCCTGTAAGTTCTTTGTTTTCGCCGCTAACCATGGCCAACCAAAGGCCTTCTACCAGCTCGCTAAGATTTTCCATACTGGTCTTGGCTTCAAGAAGAATATTCCTTTGGCAACTGCACTTTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAATCATACTTAAAAGGTGATGTTGGCAAGGCATTTATGTTGTATTCAAGAATGGCTGAGATGGGCTATGAAGTGGCACAAAGTAACGCTGCTTGGATTCTTGACAAATATGGGGAACGCAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGCGGGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAATCACAATTGAACGCGCAAGCCATGTTCAATCTTGGATACATGCATGAGCATGGCCAAGGACTTCCATATGACCTTCATCTGGCCAAGCGTTACTATGATGAAGCTCTAGAGCATGATTCTGCAGCCAAGTTGCCGGTCACGCTGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGAAATGCTACAATTCTGACCCTCTTTGTATGCCTCTTAACTGTGCTGTATCTACGTGAGAGGCAACGAAGGCAAGCTGCCGTTGCAGCTGGAGAGGTGGCTCAGCCAAATCGCCCAAATGAGCTTGGTGCACCCATGTAGCTATAGGCCAAATTGTACCATAGGAACTTATAGCTAACAGTGGAAATAAGTGCATTTGTAGATATTCATTTGTAAGGTAGGAACACGACTTTCAAACCAGTTCATTGAACCTCCAAAATGAGAGCAAGTTGTAAGATTTTGTCTTTTGTTCGAAATTTATGAAGAAATTTCACTAACCAGCACAGATTTTATTTTAGTTCAAAACTACTTTCGATTGACACTGATTTCAATCCCGAAATTAAATAAATAAATGGATCATTTATCGATTGACACTGATGATTTCAAGTTTCCACTTCAGATGATAAGGATCCATTTTGCTAAA

Coding sequences of Glyma08g05930

Limit To All Plant Sequences

>Glyma08g05930.1   sequence type=CDS   gene model=Glyma08g05930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCCCCAACCCCATCCCCAAGTGGTTGTTTCTCTCTCTGACTCTGATCCTCAGTCTCTCTGTCTCCGTCGGCGCCCGCCACTTCGTCCTCGTCCTCTCCCAGGAAGACTACAAGGACGACCCCCCCGCCGATCCCGACTCCGCCGCCGAGTGGGACGAGTTCGGCGACGGAGACTCCCACAAATCCGAGGACGACCTCGACCCCGGCTCATGGCGCCCCATCTTCGAGCCCCCCGCCGGAGATCCCCAACCCCTCCCCGAATCCGACGCCGCCTACCACTCCGCCGTCCACAAGCTCATGTCCGGCGACCCCGACCTGATCCAGGACGGCGCCGCCGAGATCGGCGCCTTGGCCGAGACCGGGCACCCCGCGTCTCAATCGGTGCTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGGGAGCGAAGCAAGGGGAAGGCCTTTCTGTACCACCACTTTGCCGCGGAGGGTGGCAACATGCAATCGAAGATGGCATTGGCATACAGCTACACGAGGCAGGACATGTTCGACAAAGGTGTAAATCTGTATGGCGAATTAGCCGAAGTGGCCGTGAACAGCTTTCTGATATCGAAGGAGTCTCCTGTGATTGAGGCGGTTAGGCTTCACAACGGGGCAGAGGAGAACAAGGAGGCTCTTAGAAAATCCAAGGGTGAAGAGGACGAGGACTTTCAGATACTTGAGTACCAGGCCCAGAAAGGGAATGCTGCTGCCATGTACAAAGTTGGTCTCTTTTACTACTTTGGCCTCAGGGGTTTGAGGCGTGACCATTCCAAGGCCCTCTGGTGGTTCCTCAAGGCCGTGGACAAGGGAGAGCCTCGATCCATGGAGCTTCTTGGAGAGATCTATGCGAGAGGAGCAGGTGTGGAGAGAAACTACACCAAGGCCTTCGAGTGGCTCACCCTTGCTTCCAGGCACCACCTCTATTCTGCCTACAATGGGATGGGGTATTTGTACGTCAAAGGCTATGGAGTTGACCAGAAGAACTACACCAAGGCCAAAGAGTATTTTGAGAAGGCTGCTGATAATGACGAGGTTGGCGGCCACTATAACCTTGGCGTCATGTATCTCAAGGGGATTGGAGTCAATAGGGATGTTAAGCTCGCCTGTAAGTTCTTTGTTTTCGCCGCTAACCATGGCCAACCAAAGGCCTTCTACCAGCTCGCTAAGATTTTCCATACTGGTCTTGGCTTCAAGAAGAATATTCCTTTGGCAACTGCACTTTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAATCATACTTAAAAGGTGATGTTGGCAAGGCATTTATGTTGTATTCAAGAATGGCTGAGATGGGCTATGAAGTGGCACAAAGTAACGCTGCTTGGATTCTTGACAAATATGGGGAACGCAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGCGGGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGGGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAATCACAATTGAACGCGCAAGCCATGTTCAATCTTGGATACATGCATGAGCATGGCCAAGGACTTCCATATGACCTTCATCTGGCCAAGCGTTACTATGATGAAGCTCTAGAGCATGATTCTGCAGCCAAGTTGCCGGTCACGCTGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGAAATGCTACAATTCTGACCCTCTTTGTATGCCTCTTAACTGTGCTGTATCTACGTGAGAGGCAACGAAGGCAAGCTGCCGTTGCAGCTGGAGAGGTGGCTCAGCCAAATCGCCCAAATGAGCTTGGTGCACCCATGTAG

>Glyma08g05930.2   sequence type=CDS   gene model=Glyma08g05930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCCCCAACCCCATCCCCAAGTGGTTGTTTCTCTCTCTGACTCTGATCCTCAGTCTCTCTGTCTCCGTCGGCGCCCGCCACTTCGTCCTCGTCCTCTCCCAGGAAGACTACAAGGACGACCCCCCCGCCGATCCCGACTCCGCCGCCGAGTGGGACGAGTTCGGCGACGGAGACTCCCACAAATCCGAGGACGACCTCGACCCCGGCTCATGGCGCCCCATCTTCGAGCCCCCCGCCGGAGATCCCCAACCCCTCCCCGAATCCGACGCCGCCTACCACTCCGCCGTCCACAAGCTCATGTCCGGCGACCCCGACCTGATCCAGGACGGCGCCGCCGAGATCGGCGCCTTGGCCGAGACCGGGCACCCCGCGTCTCAATCGGTGCTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGGGAGCGAAGCAAGGGGAAGGCCTTTCTGTACCACCACTTTGCCGCGGAGGGTGGCAACATGCAATCGAAGATGGCATTGGCATACAGCTACACGAGGCAGGACATGTTCGACAAAGGTGTAAATCTGTATGGCGAATTAGCCGAAGTGGCCGTGAACAGCTTTCTGATATCGAAGGAGTCTCCTGTGATTGAGGCGGTTAGGCTTCACAACGGGGCAGAGGAGAACAAGGAGGCTCTTAGAAAATCCAAGGGTGAAGAGGACGAGGACTTTCAGATACTTGAGTACCAGGCCCAGAAAGGGAATGCTGCTGCCATGTACAAAGTTGGTCTCTTTTACTACTTTGGCCTCAGGGGTTTGAGGCGTGACCATTCCAAGGCCCTCTGGTGGTTCCTCAAGGCCGTGGACAAGGGAGAGCCTCGATCCATGGAGCTTCTTGGAGAGATCTATGCGAGAGGAGCAGGTGTGGAGAGAAACTACACCAAGGCCTTCGAGTGGCTCACCCTTGCTTCCAGGCACCACCTCTATTCTGCCTACAATGGGATGGGGTATTTGTACGTCAAAGGCTATGGAGTTGACCAGAAGAACTACACCAAGGCCAAAGAGTATTTTGAGAAGGCTGCTGATAATGACGAGGTTGGCGGCCACTATAACCTTGGCGTCATGTATCTCAAGGGGATTGGAGTCAATAGGGATGTTAAGCTCGCCTGTAAGTTCTTTGTTTTCGCCGCTAACCATGGCCAACCAAAGGCCTTCTACCAGCTCGCTAAGATTTTCCATACTGGTCTTGGCTTCAAGAAGAATATTCCTTTGGCAACTGCACTTTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAATCATACTTAAAAGGTGATGTTGGCAAGGCATTTATGTTGTATTCAAGAATGGCTGAGATGGGCTATGAAGTGGCACAAAGTAACGCTGCTTGGATTCTTGACAAATATGGGGAACGCAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGCGGGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGGTACTGCCAGGGATTATGA

Predicted protein sequences of Glyma08g05930

Limit To All Plant Sequences

>Glyma08g05930.1   sequence type=predicted peptide   gene model=Glyma08g05930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGPNPIPKWLFLSLTLILSLSVSVGARHFVLVLSQEDYKDDPPADPDSAAEWDEFGDGDSHKSEDDLDPGSWRPIFEPPAGDPQPLPESDAAYHSAVHKLMSGDPDLIQDGAAEIGALAETGHPASQSVLGFLWGMGLLRERSKGKAFLYHHFAAEGGNMQSKMALAYSYTRQDMFDKGVNLYGELAEVAVNSFLISKESPVIEAVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALWWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASRHHLYSAYNGMGYLYVKGYGVDQKNYTKAKEYFEKAADNDEVGGHYNLGVMYLKGIGVNRDVKLACKFFVFAANHGQPKAFYQLAKIFHTGLGFKKNIPLATALYKLVAERGPWSSLSRWALESYLKGDVGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYERAAEAYMHAKSQLNAQAMFNLGYMHEHGQGLPYDLHLAKRYYDEALEHDSAAKLPVTLALSSLWVRKNYADSFMVQVIDSLPELYPKLEAWVENVLLEEGNATILTLFVCLLTVLYLRERQRRQAAVAAGEVAQPNRPNELGAPM*

>Glyma08g05930.2   sequence type=predicted peptide   gene model=Glyma08g05930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGPNPIPKWLFLSLTLILSLSVSVGARHFVLVLSQEDYKDDPPADPDSAAEWDEFGDGDSHKSEDDLDPGSWRPIFEPPAGDPQPLPESDAAYHSAVHKLMSGDPDLIQDGAAEIGALAETGHPASQSVLGFLWGMGLLRERSKGKAFLYHHFAAEGGNMQSKMALAYSYTRQDMFDKGVNLYGELAEVAVNSFLISKESPVIEAVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALWWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASRHHLYSAYNGMGYLYVKGYGVDQKNYTKAKEYFEKAADNDEVGGHYNLGVMYLKGIGVNRDVKLACKFFVFAANHGQPKAFYQLAKIFHTGLGFKKNIPLATALYKLVAERGPWSSLSRWALESYLKGDVGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGYCQGL*

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