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Report for Sequence Feature Glyma08g05900

Feature Type:gene_model
Chromosome:Gm08
Start:4209319
stop:4213414
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g05900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73590AT Annotation by Michelle Graham. TAIR10: Auxin efflux carrier family protein | chr1:27659772-27662876 FORWARD LENGTH=622 SoyBaseE_val: 0ISS
GO:0008361GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell size SoyBaseN/AISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009926GO-bp Annotation by Michelle Graham. GO Biological Process: auxin polar transport SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010051GO-bp Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation SoyBaseN/AISS
GO:0010073GO-bp Annotation by Michelle Graham. GO Biological Process: meristem maintenance SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0010229GO-bp Annotation by Michelle Graham. GO Biological Process: inflorescence development SoyBaseN/AISS
GO:0010338GO-bp Annotation by Michelle Graham. GO Biological Process: leaf formation SoyBaseN/AISS
GO:0010358GO-bp Annotation by Michelle Graham. GO Biological Process: leaf shaping SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0016310GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorylation SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0044036GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0048367GO-bp Annotation by Michelle Graham. GO Biological Process: shoot development SoyBaseN/AISS
GO:0048439GO-bp Annotation by Michelle Graham. GO Biological Process: flower morphogenesis SoyBaseN/AISS
GO:0048443GO-bp Annotation by Michelle Graham. GO Biological Process: stamen development SoyBaseN/AISS
GO:0048519GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0048826GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon morphogenesis SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009925GO-cc Annotation by Michelle Graham. GO Cellular Compartment: basal plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0045177GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apical part of cell SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF03547PFAM Membrane transport protein JGI ISS
UniRef100_I1KQK9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQK9_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q257B0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin efflux carrier n=1 Tax=Lupinus albus RepID=Q257B0_LUPAL SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g05900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g05900 not represented in the dataset
Glyma08g05900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g05900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g054700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g05900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g05900
>Glyma08g05900.1   sequence type=CDS   gene model=Glyma08g05900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAACGTTAACCGACTTTTACCATGTGATGACCGCAATGGTGCCACTGTACGTGGCCATGATACTCGCCTACGGCTCCGTGAAATGGTGGAAAATCTTCTCCCCGGACCAATGCTCTGGCATCAACCGGTTCGTTGCTCTGTTTGCGGTCCCTCTGCTCTCGTTCCACTTCATAGCCTCCAACAACCCCTACGAAATGAACTTCCGGTTCATCGCCGCCGACACGCTCCAGAAGATGATCGTGTTGGTTGTCCTGGGCATCTGGGCGAACGTGAGCAAGAGAGGGTGCTTGGAGTGGACCATAACGCTGTTCTCCATCTCCACCCTCCCAAACACGCTTGTGATGGGAATCCCCTTGCTCAAAGGCATGTACGGCGAGTTCTCGGGGAGTCTGATGGTCCAAATTGTGGTCCTCCAGTGCATCATCTGGTACACCTTGATGCTCTTCATGTTCGAGTACAGAGGCGCCAGATTGTTGATCTCTGAGCAGTTCCCAGACACTGCCGGTACCATTGTCTCCATCCATGTCGACTCTGATGTCATGTCTCTTGACGGACGACAGCACCCTCTGGAAACCGATGCCCAAATCAAAGAGGACGGCAAGCTCCACGTCACTGTCAGAAAATCCAACGCTTCCAGATCCGACATCTTTTCTAGAAGGTCCCAGGGCTTCTCTTCCACCACCCCTCGCCCTTCCAATCTCACCAATGCTGAGATTTACTCTCTTCAGTCCTCTCGAAACCCTACTCCACGTGGCTCCAGTTTCAACCACACCGATTTCTACTCCATGATGGCTGCTGGTCGTAATTCTAACTTTGGTGCCAACGATGTTTATGGCCTTTCTGCTTCCAGAGGACCAACTCCCAGACCTTCCAATTACGACGAGGATGCTTCTAATAATAACAATGGGAAGCCGAGGTACCACTACCCTGCTGCTGGAACAGGAACAGGAACAGGAACAGGAACGGGAACGGGAACAGGGCACTACCCTGCTCCTAACCCTGGCATGTTCTCTCCCACTGCTTCTAAAAACGTCGCCAAGAAGCCAGACGATCCAAATAAGGACCTTCATATGTTCGTTTGGAGTTCAAGTGCTTCCCCGGTTTCGGATGTGTTTGGTGGTGGACATGAATATGATCATAAAGAACTCAAGTTAACTGTATCTCCAGGAAAAGTGGAGGGTAATATTAATAGAGACACTCAAGAGGAGTACCAGCCAGAGAAAGATGAATTTAGTTTTGGAAACAGAGGGATTGAGGATGAGCATGAAGGTGAGAAAGTTGGAAACGGAAATCCAAAAACAATGCCTCCAGCAAGTGTAATGACGAGGCTTATTTTGATCATGGTGTGGAGGAAACTTATCAGAAACCCCAACACCTACTCCAGCCTAATCGGCCTAACTTGGTCACTCATTTCATTCAGGTGGAACGTAAAAATGCCAGCCATAATTGCCAAGTCTATTTCGATATTGTCAGATGCAGGGCTTGGGATGGCCATGTTTAGTCTTGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGAAATTCCACAGCAGCTTTTTCTATGGCCGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGCGTTCTCTTGCACGTTGCTATTGTTCAGGCAGCTCTTCCTCAAGGAATTGTCCCATTTGTCTTTGCCAAGGAATACAATGTACATCCTGATATTCTCAGTACGGGTGTTATTTTTGGGATGTTGATTGCATTGCCCATTACGCTCGTGTACTACATCTTGCTGGGGTTATGA
Predicted protein sequences of Glyma08g05900
>Glyma08g05900.1   sequence type=predicted peptide   gene model=Glyma08g05900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYEMNFRFIAADTLQKMIVLVVLGIWANVSKRGCLEWTITLFSISTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGTIVSIHVDSDVMSLDGRQHPLETDAQIKEDGKLHVTVRKSNASRSDIFSRRSQGFSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGRNSNFGANDVYGLSASRGPTPRPSNYDEDASNNNNGKPRYHYPAAGTGTGTGTGTGTGTGHYPAPNPGMFSPTASKNVAKKPDDPNKDLHMFVWSSSASPVSDVFGGGHEYDHKELKLTVSPGKVEGNINRDTQEEYQPEKDEFSFGNRGIEDEHEGEKVGNGNPKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLISFRWNVKMPAIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSTAAFSMAVRFLTGPAVMAAASIAVGLKGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL*






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