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Report for Sequence Feature Glyma08g05881

Feature Type:gene_model
Chromosome:Gm08
Start:4195712
stop:4197794
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g05881
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48580AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 91 Blast hits to 91 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:17958403-17960610 REVERSE LENGTH=454 SoyBaseE_val: 1.00E-49ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q9LP66UniRef Annotation by Michelle Graham. Most informative UniRef hit: T1N15.20 n=1 Tax=Arabidopsis thaliana RepID=Q9LP66_ARATH SoyBaseE_val: 6.00E-44ISS
UniRef100_UPI0001BA8674UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001BA8674 related cluster n=1 Tax=unknown RepID=UPI0001BA8674 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g05881
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g05881 not represented in the dataset
Glyma08g05881 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g05881 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g054400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g05881
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g05881
>Glyma08g05881.1   sequence type=CDS   gene model=Glyma08g05881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGAACCCTGGGAAGCACTTGACGTGGATGACACCAATCTCTCCGCCTTCCTCCGCCCTTGCAACTCTAATTCCGATTCCTCTTCCCTCATTCCCGGTCCTGCCGGCGCCGTCCAGGCCGTGATGAGGAACCGGCGCCACCATGACCCCCTCTCCACTCAAGAATTTCTAAAGCGAGTTGAGCGCCAAAGTGACCGCGATTTCAACACCAATCCCTGGCTCTGTGCCCTCCAATTCGTGCACTTGCAGGGTGGTGATGATGACGTGGCACACGGCACTCCGTTGAGCTCAATCCAGAACAACGCCGAGACTGAGAGAGTACCGTTGATCGTGGCCCTTGTCAAATCCTCCACTCCCAATGGTTTCGGAGACATCACGGTTAACCTCAAGGATCCTACAGCCACTCTTACTGCCACTGTCCATCGCAAAGTTTTTTCACATCCAGATCTTAGGAAGGAAATTTTAACTGTTGGTTCAGTTTTAATTCTCCAAAAGGTTGCTGTGTTCTCTCCCAATCGCAATACCCGTTATCTCAACATAACATTGCACAACATTGTCAAGGTATTTCCCAAGGACAGTGGACCTCCATCACAACAACTAACATATCCTGCATGCCCAGTGATACGCACTACACCTAGTATGGAAAGACATGAAAGGTTATTGACACCAGGCAGTACATTCTCTCTGCCACTGGAAAGAACCGAAGGAATCATGTCTAATCTCAGGTTTGATTCAAGCTTTAGACAAGTAGCAGATAGTGACAGGCAGAGGAGTGAAGTTTTGGCTTCAACGAGCTTTCGCAGTGATAATGGAAACGATCAAAACCGAGAAACTGTTTCAGAAGGAGAGAACTTATCATTGAGTCTGGATAATGCTGGACCTGTGAAAGTAAACTGTGGTGGTGAGCTTGAAAGTGAGGTGGAAGATCAACCCAACCCCCCTAAATTGGATGAAGGAGGAGACATTCTAGCACGGATTGCTCAAGGCAATAGTTCTGCAACAAACTCAATTCCTACATCTCATGGTGAAAAAACTGGGATGGAGAATCACTTTGAAAGACAGACGCAGATGGTAAATAAAAAATGTTCGTTCCCACATTGGACAGAGGAACAGCTGGATGAGCTTTTAGCATTTGATTGA
Predicted protein sequences of Glyma08g05881
>Glyma08g05881.1   sequence type=predicted peptide   gene model=Glyma08g05881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLEPWEALDVDDTNLSAFLRPCNSNSDSSSLIPGPAGAVQAVMRNRRHHDPLSTQEFLKRVERQSDRDFNTNPWLCALQFVHLQGGDDDVAHGTPLSSIQNNAETERVPLIVALVKSSTPNGFGDITVNLKDPTATLTATVHRKVFSHPDLRKEILTVGSVLILQKVAVFSPNRNTRYLNITLHNIVKVFPKDSGPPSQQLTYPACPVIRTTPSMERHERLLTPGSTFSLPLERTEGIMSNLRFDSSFRQVADSDRQRSEVLASTSFRSDNGNDQNRETVSEGENLSLSLDNAGPVKVNCGGELESEVEDQPNPPKLDEGGDILARIAQGNSSATNSIPTSHGEKTGMENHFERQTQMVNKKCSFPHWTEEQLDELLAFD*






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