Glyma08g05865 - SoyBase

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Report for Sequence Feature Glyma08g05865

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4175927
stop:	4177426
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05865

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF01388	PFAM	ARID/BRIGHT DNA binding domain	JGI		ISS
UniRef100_G7IF34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: High mobility group protein B3 n=1 Tax=Medicago truncatula RepID=G7IF34_MEDTR	SoyBase	E_val: 5.00E-07	ISS
UniRef100_G7KBS3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7KBS3_MEDTR	SoyBase	E_val: 1.00E-54	ISS

Expression Patterns of Glyma08g05865

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g05865 not represented in the dataset	Glyma08g05865 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g05865 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g054200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05865

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05865

Limit To All Plant Sequences

>Glyma08g05865.1   sequence type=CDS   gene model=Glyma08g05865   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACCAAAGAGGAGATAATGCTTCCATCACCGTCCAAAGGCCTTGCTAATAATGGCGAACAGTGTTCTCCGGGTGATGACTCCGGGAGCTTCTATATGAAACTCGCTGTGTTGTTGGAGTCCTCTGGACTCAGTCTCATCTTCAATGTCCGAGAAACATTGCTGGACTTGTACCTATTTTACTTGGAGGTGACTAGAAGAGAAGGATATCACCAGGTTGATCGAGAAAAGAAATGGGGTGAAGTAGTATTTGCCCTGAAATTGGAAGGGAATAGTGTAAAGTTATGTGCTCAAGCTGAAAAGTTTTACGCACATCTTCTCTACCAATTTGAGCAATTGTACTTCTACAGGCGTCCTGCAAAGCAAGCTGGATCTAACAGCACCAAAGGTCCACTTCAGAAGAAGCGGAAATCAACAGCTAGTTTACCTCATACAATGGATATTAAAGATGGTCATAAGAAGACCACAGAGATGTCCAAGGACTACTCTTGCAACATGACAGCAGGTGCTGGGTATGTGGTTTTACCGCCACCCTCACATGTCAAAGAAACCAAGAAACACCGAGGTTCTCTGCCGGGACAAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCTCGACTGAACTTGTGGTCAGGCCTTAGAAGGCCAGAAAATCCTACGTTTGGCTATCGATGCATGGAGGAATATGTCTACAATTGA

Predicted protein sequences of Glyma08g05865

Limit To All Plant Sequences

>Glyma08g05865.1   sequence type=predicted peptide   gene model=Glyma08g05865   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METKEEIMLPSPSKGLANNGEQCSPGDDSGSFYMKLAVLLESSGLSLIFNVRETLLDLYLFYLEVTRREGYHQVDREKKWGEVVFALKLEGNSVKLCAQAEKFYAHLLYQFEQLYFYRRPAKQAGSNSTKGPLQKKRKSTASLPHTMDIKDGHKKTTEMSKDYSCNMTAGAGYVVLPPPSHVKETKKHRGSLPGQKTAYQIFLKHECARLNLWSGLRRPENPTFGYRCMEEYVYN*

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