Glyma08g05840 - SoyBase

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Report for Sequence Feature Glyma08g05840

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4165127
stop:	4166886
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01390	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr2:172256-174137 FORWARD LENGTH=577	SoyBase	E_val: 2.00E-160	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7LDD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7LDD6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338B53	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338B53 related cluster n=1 Tax=unknown RepID=UPI0002338B53	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05840

Paralog	Evidence	Comments
Glyma05g33840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g053900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05840

Limit To All Plant Sequences

>Glyma08g05840.2   sequence type=CDS   gene model=Glyma08g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAATCTACAAGCTTGATGGATTTCTCAGAAATCTTGTTCCTTCTCCTTCCACCAGAGCCATCAGCAACATGAAGAAAGGCGAGAAATTGAAATTGAAGGATGAGCACAGAGAGTATATGAGGAACGTAATTGGGAAAATTTACAAGACGCTAAAGTATTCAAGTTGGGAAAGCGCCGAGCAAGAGCTGAATAATATGTCTTTGAGGTGGGACTCTTACACGGTGAACCAGGTTCTCAAGTCCCACCCTCCAATGGAGAAAGCGTGGTTGTTCTTCAACTGGGCCTCTTCCCTCAGAGGCTTCAAGCACGACCACTACACTTACACTACCATGCTTGATATTTTCGGAGAAGCTGGCAGAGTCTCTTCCATCAAGCTTGATTCTGTTACCTACACTTCCATGATGCATTGGCTTTCCAGTTCCGGGAACACTGTTGTCTCTTACACCGCTTATATCAAGATTCTCTTTCATAATCGAAGACTCAAAGAGGCCACTCGTGTTTACAAGGAGATGATTAGCTCCGGTGTTGCTCCTAATTGCCACACTTACACCGTTCTAATGGACTATCTTATTGCCTCTGGAAAATGCAAAGAGGCCCTAGAGATTTTTGAAAAGATGCAAGAGGCTGGGGCGCAACCTGATAAAGCTGCATGCAATATTTTGATTCAGAGGTGTTCTAAAGTTGGTGGGACTGAGTTCATGACCCATATCCTTCACTTTAAAATTTCTGGTGAGACTGATACCCTTCTGAGGCAAGTCAATCCACAATTTTATATGGATTGTAGCACAAGGAAGGATGCAAGTAATAGTATCACGGTTGCTGCAGATTGTCCTACTAATATAGATAACGAGCTTCTATTTGTTCTCTTGAAAAATAGAAATGTTGTTGCTATTGACCATTTACTTACAGGGATGATGGATAAGAAAATATATTTAGAACATAAGGTTGTCTCAACCATTATTGAGGTAAATTGTAGTCATTGTCGACCTAAAGGTGCTTTGTTGGCTTTCAAGTACAGTGTTACAATGGGAATAAGTATTGAGAGAACAGGATATCTTTCCTTAATCGGCTTGTTGATCAGATCAAATATGTTTTCAAAGCTGGTGGAAATTGTTGAGGAAATGACTAGAGCTGGGTATTCTCTTGGAACCTATTTGGCTTCACTTTTGATCATTAGCTTGATTTTCAACTTATTACCTGATAACCATAAGTGCACTGCTACCTTTACTGCTTTAATTAGTGTTTACTTCTCTGTTAGAAGAGTTACCAAGGCTCTTGAGATTTACAAAATCATGTGCACCAAAGGATTTTGTCCCGTGTTAGGTACTTATGATGTACTAATAGCTGGTTTTGAAACAAATGGTAAATATGCTGAAGCAGAACATTATAGGAAAGCAAAGAAGAGCAAGAGCTTACATGCCAATAGTGGTTCTCAAGAAAGTGTTTGCATAGAGGGGAAGATATGCAATCTTCTGTTTTCTGTTGATGTAGTACTTTGA

Predicted protein sequences of Glyma08g05840

Limit To All Plant Sequences

>Glyma08g05840.2   sequence type=predicted peptide   gene model=Glyma08g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIYKLDGFLRNLVPSPSTRAISNMKKGEKLKLKDEHREYMRNVIGKIYKTLKYSSWESAEQELNNMSLRWDSYTVNQVLKSHPPMEKAWLFFNWASSLRGFKHDHYTYTTMLDIFGEAGRVSSIKLDSVTYTSMMHWLSSSGNTVVSYTAYIKILFHNRRLKEATRVYKEMISSGVAPNCHTYTVLMDYLIASGKCKEALEIFEKMQEAGAQPDKAACNILIQRCSKVGGTEFMTHILHFKISGETDTLLRQVNPQFYMDCSTRKDASNSITVAADCPTNIDNELLFVLLKNRNVVAIDHLLTGMMDKKIYLEHKVVSTIIEVNCSHCRPKGALLAFKYSVTMGISIERTGYLSLIGLLIRSNMFSKLVEIVEEMTRAGYSLGTYLASLLIISLIFNLLPDNHKCTATFTALISVYFSVRRVTKALEIYKIMCTKGFCPVLGTYDVLIAGFETNGKYAEAEHYRKAKKSKSLHANSGSQESVCIEGKICNLLFSVDVVL*

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