Glyma08g05810 - SoyBase

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Report for Sequence Feature Glyma08g05810

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4131808
stop:	4133296
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18210	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr1:6268273-6268785 REVERSE LENGTH=170	SoyBase	E_val: 3.00E-58	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG0027	KOG	Calmodulin and related proteins (EF-Hand superfamily)	JGI		ISS
PTHR10891	Panther	CALMODULIN	JGI		ISS
PTHR10891:SF39	Panther	EF-HAND CALCIUM BINDING PROTEIN	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
UniRef100_Q93YA8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium binding protein n=1 Tax=Sesbania rostrata RepID=Q93YA8_SESRO	SoyBase	E_val: 9.00E-90	ISS
UniRef100_UPI0001817F8C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001817F8C related cluster n=1 Tax=unknown RepID=UPI0001817F8C	SoyBase	E_val: 5.00E-129	ISS

Expression Patterns of Glyma08g05810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g05810 not represented in the dataset	Glyma08g05810 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05810

Paralog	Evidence	Comments
Glyma05g33880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g053500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g05810

Limit To All Plant Sequences

>Glyma08g05810.2   sequence type=transcript   gene model=Glyma08g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTCCGTCAACTACAAGAGTGGGTCCACTTTGCACGCGGATATTAATCGAAACCAAGGGAGTGCATATAATGGCCCAAAATGGTACCGCTCCATTCACCTCTCGAATTTTGATTTCCTTCTCTCTTTCACCAATCAACACAAACTAAGTTCTTCCTTCTGTTGAAAGCGATAGCAATGGCCACGAATCCAATCGAAGCGGGGAACGGCGACGCTGCTCCCAACCCTAACGCGACTACCAAATCCTCCGTGTACCTGCAAGACTCGGAGGAGCTGAAGCGAGTCTTCAGCCGCTTCGACGCCAACGGCGACGGCAAGATCTCCGTCTCGGAGTTGGACAACGTCCTCCGCTCCCTCGGATCCGGCGTCCCGCCGGAGGAGCTCCAGCGTGTCATGGAAGACCTTGACACCGATCACGACGGCTTCATTAACCTCTCGGAGTTCGCCGCCTTCTGCCGCTCCGACACCGCGGACGGCGGCGACACCGAGCTCCACGATGCCTTCAACCTGTACGATCAGGACAAGAACGGCCTCATATCCGCCACGGAGCTCTGCCAGGTGCTGAACCGCCTCGGAATGAAGTGCTCCGTGGAGGAATGCCACAACATGATCAAATCCGTGGATTCCGACGGCGACGGCAACGTCAACTTCCCCGAGTTCAAGCGGATGATGAGCAACAATCGCGAAAATGCTAGCAATGCTGAAGAAAAAACAGATTAGGCCCTTTGGATTTGAATTTTATAGATAGGCTAGGCACTTTCGCTGCACAATCTCTTGACTAATAAATCTAGTCAATCGTGAATTCAAAATTTGCTCTGTTTATTTGTTGCAAGTCGTGCTTAATTGGTGGCTATATTGACGGAATCACGCCGTGACGATTTATGCGTGTTCAATGGTCGGCTTTGAAGAAGAAATTCTGGCATTCGGAATCACGCCGTGATGATTTATTCTTGTTCAATGATCACGCCGTTAATTGATATATGAAATTTTAATTGGATACTGGTACTATTTGTATAATCGAAAATATCTGTACGTAGAGTGTCACAAACACAAGAAGAAACGGAAAATGGTGATACTGACAGGGCCATGGAAATTGCGAGCAGCGCAATTCAATGGCCGTACTGGTACATCCTAGTGGATGGAAAAAAAAGATGTGTCAGAGGACATTTAATATCAGACAACGTGGTTGAAGGAATATGTTTCAGTTTGGGATTATCTTACGATCACTTTTTTTATTATTTTTAAAAAGGGAACTTTTGTTGGTTAGGTTTGGATTAAAATTTGAAAAAGTATCTTTTGCAAAATGTATAATAACAAATAAAATGTTGTTTCTAGAATAAAAGTATTTTTCAACTCTTCTATTTTTAATCTAAACATGTA

>Glyma08g05810.3   sequence type=transcript   gene model=Glyma08g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTCCGTCAACTACAAGAGTGGGTCCACTTTGCACGCGGATATTAATCGAAACCAAGGGAGTGCATATAATGGCCCAAAATGGTACCGCTCCATTCACCTCTCGAATTTTGATTTCCTTCTCTCTTTCACCAATCAACACAAACTAAGTTCTTCCTTCTGTTGAAAGCGATAGCAATGGCCACGAATCCAATCGAAGCGGGGAACGGCGACGCTGCTCCCAACCCTAACGCGACTACCAAATCCTCCGTGTACCTGCAAGACTCGGAGGAGCTGAAGCGAGTCTTCAGCCGCTTCGACGCCAACGGCGACGGCAAGATCTCCGTCTCGGAGTTGGACAACGTCCTCCGCTCCCTCGGATCCGGCGTCCCGCCGGAGGAGCTCCAGCGTGTCATGGAAGACCTTGACACCGATCACGACGGCTTCATTAACCTCTCGGAGTTCGCCGCCTTCTGCCGCTCCGACACCGCGGACGGCGGCGACACCGAGCTCCACGATGCCTTCAACCTGTACGATCAGGACAAGAACGGCCTCATATCCGCCACGGAGCTCTGCCAGGTGCTGAACCGCCTCGGAATGAAGTGCTCCGTGGAGGAATGCCACAACATGATCAAATCCGTGGATTCCGACGGCGACGGCAACGTCAACTTCCCCGAGTTCAAGCGGATGATGAGCAACAATCGCGAAAATGCTAGCAATGCTGAAGAAAAAACAGATTAGGCCCTTTGGATTTGAATTTTATAGATAGGCTAGGCACTTTCGCTGCACAATCTCTTGACTAATAAATCTAGTCGTGCTTAATTGGTGGCTATATTGACGGAATCACGCCGTGACGATTTATGCGTGTTCAATGGTCGGCTTTGAAGAAGAAATTCTGGCATTCGGAATCACGCCGTGATGATTTATTCTTGTTCAATGATCACGCCGTTAATTGATATATGAAATTTTAATTGGATACTGGTACTATTTGTATAATCGAAAATATCTGTACGTAGAGTGTCACAAACACAAGAAGAAACGGAAAATGGTGATACTGACAGGGCCATGGAAATTGCGAGCAGCGCAATTCAATGGCCGTACTGGTACATCCTAGTGGATGGAAAAAAAAGATGTGTCAGAGGACATTTAATATCAGACAACGTGGTTGAAGGAATATGTTTCAGTTTGGGATTATCTTACGATCACTTTTTTTATTATTTTTAAAAAGGGAACTTTTGTTGGTTAGGTTTGGATTAAAATTTGAAAAAGTATCTTTTGCAAAATGTATAATAACAAATAAAATGTTGTTTCTAGAATAAAAGTATTTTTCAACTCTTCTATTTTTAATCTAAACATGTA

Coding sequences of Glyma08g05810

Limit To All Plant Sequences

>Glyma08g05810.1   sequence type=CDS   gene model=Glyma08g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACGAATCCAATCGAAGCGGGGAACGGCGACGCTGCTCCCAACCCTAACGCGACTACCAAATCCTCCGTGTACCTGCAAGACTCGGAGGAGCTGAAGCGAGTCTTCAGCCGCTTCGACGCCAACGGCGACGGCAAGATCTCCGTCTCGGAGTTGGACAACGTCCTCCGCTCCCTCGGATCCGGCGTCCCGCCGGAGGAGCTCCAGCGTGTCATGGAAGACCTTGACACCGATCACGACGGCTTCATTAACCTCTCGGAGTTCGCCGCCTTCTGCCGCTCCGACACCGCGGACGGCGGCGACACCGAGCTCCACGATGCCTTCAACCTGTACGATCAGGACAAGAACGGCCTCATATCCGCCACGGAGCTCTGCCAGGTGCTGAACCGCCTCGGAATGAAGTGCTCCGTGGAGGAATGCCACAACATGATCAAATCCGTGGATTCCGACGGCGACGGCAACGTCAACTTCCCCGAGTTCAAGCGGATGATGAGCAACAATCGCGAAAATGCTAGCAATGCTGAAGAAAAAACAGATTAG

>Glyma08g05810.2   sequence type=CDS   gene model=Glyma08g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACGAATCCAATCGAAGCGGGGAACGGCGACGCTGCTCCCAACCCTAACGCGACTACCAAATCCTCCGTGTACCTGCAAGACTCGGAGGAGCTGAAGCGAGTCTTCAGCCGCTTCGACGCCAACGGCGACGGCAAGATCTCCGTCTCGGAGTTGGACAACGTCCTCCGCTCCCTCGGATCCGGCGTCCCGCCGGAGGAGCTCCAGCGTGTCATGGAAGACCTTGACACCGATCACGACGGCTTCATTAACCTCTCGGAGTTCGCCGCCTTCTGCCGCTCCGACACCGCGGACGGCGGCGACACCGAGCTCCACGATGCCTTCAACCTGTACGATCAGGACAAGAACGGCCTCATATCCGCCACGGAGCTCTGCCAGGTGCTGAACCGCCTCGGAATGAAGTGCTCCGTGGAGGAATGCCACAACATGATCAAATCCGTGGATTCCGACGGCGACGGCAACGTCAACTTCCCCGAGTTCAAGCGGATGATGAGCAACAATCGCGAAAATGCTAGCAATGCTGAAGAAAAAACAGATTAG

>Glyma08g05810.3   sequence type=CDS   gene model=Glyma08g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACGAATCCAATCGAAGCGGGGAACGGCGACGCTGCTCCCAACCCTAACGCGACTACCAAATCCTCCGTGTACCTGCAAGACTCGGAGGAGCTGAAGCGAGTCTTCAGCCGCTTCGACGCCAACGGCGACGGCAAGATCTCCGTCTCGGAGTTGGACAACGTCCTCCGCTCCCTCGGATCCGGCGTCCCGCCGGAGGAGCTCCAGCGTGTCATGGAAGACCTTGACACCGATCACGACGGCTTCATTAACCTCTCGGAGTTCGCCGCCTTCTGCCGCTCCGACACCGCGGACGGCGGCGACACCGAGCTCCACGATGCCTTCAACCTGTACGATCAGGACAAGAACGGCCTCATATCCGCCACGGAGCTCTGCCAGGTGCTGAACCGCCTCGGAATGAAGTGCTCCGTGGAGGAATGCCACAACATGATCAAATCCGTGGATTCCGACGGCGACGGCAACGTCAACTTCCCCGAGTTCAAGCGGATGATGAGCAACAATCGCGAAAATGCTAGCAATGCTGAAGAAAAAACAGATTAG

Predicted protein sequences of Glyma08g05810

Limit To All Plant Sequences

>Glyma08g05810.1   sequence type=predicted peptide   gene model=Glyma08g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNPIEAGNGDAAPNPNATTKSSVYLQDSEELKRVFSRFDANGDGKISVSELDNVLRSLGSGVPPEELQRVMEDLDTDHDGFINLSEFAAFCRSDTADGGDTELHDAFNLYDQDKNGLISATELCQVLNRLGMKCSVEECHNMIKSVDSDGDGNVNFPEFKRMMSNNRENASNAEEKTD*

>Glyma08g05810.2   sequence type=predicted peptide   gene model=Glyma08g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNPIEAGNGDAAPNPNATTKSSVYLQDSEELKRVFSRFDANGDGKISVSELDNVLRSLGSGVPPEELQRVMEDLDTDHDGFINLSEFAAFCRSDTADGGDTELHDAFNLYDQDKNGLISATELCQVLNRLGMKCSVEECHNMIKSVDSDGDGNVNFPEFKRMMSNNRENASNAEEKTD*

>Glyma08g05810.3   sequence type=predicted peptide   gene model=Glyma08g05810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNPIEAGNGDAAPNPNATTKSSVYLQDSEELKRVFSRFDANGDGKISVSELDNVLRSLGSGVPPEELQRVMEDLDTDHDGFINLSEFAAFCRSDTADGGDTELHDAFNLYDQDKNGLISATELCQVLNRLGMKCSVEECHNMIKSVDSDGDGNVNFPEFKRMMSNNRENASNAEEKTD*

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