Glyma08g05800 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g05800

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4122964
stop:	4126261
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73640	AT	Annotation by Michelle Graham. TAIR10: RAB GTPase homolog A6A \| chr1:27687033-27687987 FORWARD LENGTH=233	SoyBase	E_val: 1.00E-99	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0087	KOG	GTPase Rab11/YPT3, small G protein superfamily	JGI		ISS
PTHR24073	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24073:SF213	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_I1KQK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQK0_SOYBN	SoyBase	E_val: 1.00E-158	ISS
UniRef100_Q6ZXT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Small GTPase n=1 Tax=Medicago sativa RepID=Q6ZXT1_MEDSA	SoyBase	E_val: 3.00E-125	ISS

Expression Patterns of Glyma08g05800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05800

Paralog	Evidence	Comments
Glyma05g33970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g053400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g05800

Limit To All Plant Sequences

>Glyma08g05800.2   sequence type=transcript   gene model=Glyma08g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATTGAAAAATTTGATGGGGACAGGTGGAACAACACCATTGGACCTTCTTTGAAGTTGGAGGCAAACCATGGTTGGCTTTTCCACTAGATTAATGACATCCACAGGTCTGGAGGACAACATAAAGGATTATTACTCATAATGTCTTTTTTCAATGGTTTCACATGTAAATACTCAACACCCTCCAAAAACAATTCCATAGAATTGTGTAGTGTAGTGTCCCCTTTGTTTTACAATCTTAATATAATTTCTAACCCTATAAATATGATCATGACCTTACACCCTATTTTGACTCTCTTCCTTGCCCGAATAGCTCATGATCAACATTTTCTTTATCGTTAAGTTTTTTCTTCTCCTCATTAGTCTTGTTCCCTTTGAATTTCTTCTGTCCGGGTATTAGTAGAAAAATAAAGGCTTTAGAGGTGAAGGTAGAGATCAATAGATAAGGGTGATATTATGGCTGATGCATTTGATGAAGAGTGTGATTATCTCTTCAAAGCTGTTTTGATCGGAGACTCCGGAGTTGGGAAATCAAATCTGCTCTCAAGGTTTGCAAAAGATGAATTCCGGTTGGATTCCAAACCCACCATTGGAGTTGAATTTGCTTACCGGAACATCAAGGTTGGAGACAAACTCATCAAAGCTCAAATATGGGACACTGCTGGCCAAGAAAGGTTGGTATTTGGTTTAGAGCAATCACAAGTTCATACTATAGAGGAGCCTTAGGGGCAATGCTAGTGTATGACATAAGCAGGAGATCAAGTTATGAGAATGTGAGCAAATGGCTACTGGAGCTGAGGGAGTTTGGAGGCGAGGACATGGTGGTTGTTCTGGTGGGAAACAAATGTGATCTGGATGGTCAATCAAGAGAAGTTGACAAAGAAGAAGGAAAAGGGTTTGCGGAAACAGAAGGATTATGCTTCATGGAAACCTCTGCTTTGAAGAATCTCAACGTTGAGGAAGTTTTCTTACAAATGATCACAAGGATTTATGACATGACAAGCCAGAAAAATTTGGCAGCTAAAATGGACGAGAAACCGATTAATCTTTTGAATGGGAAGGAGATCCATATAGCTGATGAAGTCACTGCAACTAAACAATCTAGTACTTGCTGTTCAAGATGAAGTTTTGGATTTTTGGGAGTAAAATTCATTCTTCCTATTTTCTCCACTTCCCCTTTACAATTTTCTTCTTCTTCTTATTGGCCTTCCAAGTAATGATTATATATACACAAAATTATAGTAAAAAGGTAGTAAAACAAACACTTTTATAGTAAAAATGTGTTTCTAGACAAATCAATAGCGCACTTACGCGCAATTAAAAAAAAGAAGGAAATCCAGAATCGAATTTTGCCTTTGTGCTTCCCCGATTACAC

Coding sequences of Glyma08g05800

Limit To All Plant Sequences

>Glyma08g05800.1   sequence type=CDS   gene model=Glyma08g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATGCATTTGATGAAGAGTGTGATTATCTCTTCAAAGCTGTTTTGATCGGAGACTCCGGAGTTGGGAAATCAAATCTGCTCTCAAGGTTTGCAAAAGATGAATTCCGGTTGGATTCCAAACCCACCATTGGAGTTGAATTTGCTTACCGGAACATCAAGGTTGGAGACAAACTCATCAAAGCTCAAATATGGGACACTGCTGGCCAAGAAAGGTTTAGAGCAATCACAAGTTCATACTATAGAGGAGCCTTAGGGGCAATGCTAGTGTATGACATAAGCAGGAGATCAAGTTATGAGAATGTGAGCAAATGGCTACTGGAGCTGAGGGAGTTTGGAGGCGAGGACATGGTGGTTGTTCTGGTGGGAAACAAATGTGATCTGGATGGTCAATCAAGAGAAGTTGACAAAGAAGAAGGAAAAGGGTTTGCGGAAACAGAAGGATTATGCTTCATGGAAACCTCTGCTTTGAAGAATCTCAACGTTGAGGAAGTTTTCTTACAAATGATCACAAGGATTTATGACATGACAAGCCAGAAAAATTTGGCAGCTAAAATGGACGAGAAACCGATTAATCTTTTGAATGGGAAGGAGATCCATATAGCTGATGAAGTCACTGCAACTAAACAATCTAGTACTTGCTGTTCAAGATGA

>Glyma08g05800.2   sequence type=CDS   gene model=Glyma08g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACACTGCTGGCCAAGAAAGGTTGGTATTTGGTTTAGAGCAATCACAAGTTCATACTATAGAGGAGCCTTAGGGGCAATGCTAGTGTATGACATAAGCAGGAGATCAAGTTATGAGAATGTGAGCAAATGGCTACTGGAGCTGAGGGAGTTTGGAGGCGAGGACATGGTGGTTGTTCTGGTGGGAAACAAATGTGATCTGGATGGTCAATCAAGAGAAGTTGACAAAGAAGAAGGAAAAGGGTTTGCGGAAACAGAAGGATTATGCTTCATGGAAACCTCTGCTTTGAAGAATCTCAACGTTGAGGAAGTTTTCTTACAAATGATCACAAGGATTTATGACATGACAAGCCAGAAAAATTTGGCAGCTAAAATGGACGAGAAACCGATTAATCTTTTGAATGGGAAGGAGATCCATATAGCTGATGAAGTCACTGCAACTAAACAATCTAGTACTTGCTGTTCAAGATGA

Predicted protein sequences of Glyma08g05800

Limit To All Plant Sequences

>Glyma08g05800.1   sequence type=predicted peptide   gene model=Glyma08g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADAFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVGDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDISRRSSYENVSKWLLELREFGGEDMVVVLVGNKCDLDGQSREVDKEEGKGFAETEGLCFMETSALKNLNVEEVFLQMITRIYDMTSQKNLAAKMDEKPINLLNGKEIHIADEVTATKQSSTCCSR*

>Glyma08g05800.2   sequence type=predicted peptide   gene model=Glyma08g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHCWPRKVGIWFRAITSSYYRGALGAMLVYDISRRSSYENVSKWLLELREFGGEDMVVVLVGNKCDLDGQSREVDKEEGKGFAETEGLCFMETSALKNLNVEEVFLQMITRIYDMTSQKNLAAKMDEKPINLLNGKEIHIADEVTATKQSSTCCSR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain