SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G56150 | AT | Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 3C | chr3:20833790-20836820 REVERSE LENGTH=900 | SoyBase | E_val: 0 | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005852 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 3 complex | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1076 | KOG | Translation initiation factor 3, subunit c (eIF-3c) | JGI | ISS | |
| PTHR13937 | Panther | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 (EIF3S8)-RELATED | JGI | ISS | |
| PF01399 | PFAM | PCI domain | JGI | ISS | |
| PF05470 | PFAM | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | JGI | ISS | |
| UniRef100_G7IN73 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit C n=2 Tax=Medicago truncatula RepID=G7IN73_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023380E1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023380E1 related cluster n=1 Tax=unknown RepID=UPI00023380E1 | SoyBase | E_val: 0 | ISS |
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Glyma08g05740 not represented in the dataset |
Glyma08g05740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g33930 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g052900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g05740.1 sequence type=CDS gene model=Glyma08g05740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCAAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGATACCACAGTGGGTGAAGCTTCTGGTCAAGCAGTGACAAGCAGGTACCTGCAGGATAATGCAAGTGACAGTGATGACTCTGATGGCCAAAAGCGCGTTGTGAGGTCTGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAATGATTGGGTGAGCTTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAGGTCATGCGTGTCACTGAGTCTGAAAGGGTCCCCAATCTTTACATCAAGGCTCTCGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGCAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGACTTGATTAATAAGTGCAGGGAGAACCCTGAGAGCGAGGAGGAAAAAGAAGAAGAGGAGAGCGATGAAGAGTATGACAGTGATGGTGAGATTATTGATCCGGATCAGCTTCAAAAACCCGAAGCAAAATCTGATTCGGAAGCCTCTCAATATGAAGATGAAAAGCCAGATGCTGGTGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGGCTTTTGGATAGACAGTTCATGAAAAACCCTAGTGAGATCACGTGGGATGCGGTTAACAAGAAGTTTAAAGAGGTTGTGGCTGCCAGGGGAAGAAAGGGAACTGGTAGGTTTGAACAGGTTGAGCAGCTCACCTTCTTAACAAAAGTTGCTAAGACACCTGCACAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCGGGCCTCAATGGGCATATGCCCATCAATGTATGGAAAAAATGTGTACAGAACATGCTGATCATTCTTGATATTTTGGTGCAGTACCCAAACATAATGGTTGATGATTCCGTGGAACCGGATGAGAATGAAACTCAGAAAGGTGCTGAACATAATGGAACAATTCGGGTTTGGGGTAACTTAGTTGCTTTTTTAGAAAGAATTGATGTCGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACGCGTGACTATGTTGAGAGACTTAGGGATGAGCCCACGTTTCTGGTTCTTGCCCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCGCTTCTAAGGTTGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCCCAAGAGGTTTATGATGCCATGAGAAAATTGACTGAATTGACAGAAGATGGAGATAATGGAGGGGAGGCAAGTGAGAAGGAATTTGAGGAATCAAGGATTCCTACTGCATTTGTAGTTACCCCAGAGGTTGTTACACGGAAACCCACCTTCCCTGAGAATAGCAGGACCCTAATGGATATATTGGTATCTATGATATACAAATATGGAGATGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATATCATCATGCTCTTCTTGATGAGTTTTCAATAGCCCGTGATCTGCTTCTTATGAGCCATTTGCAAGACAGTGTTCAGCATATGGACATTTCAACGCAGATACTTTTTAACAGGGCCATGTCACAGTTAGGTTTATGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTCTACTCTGGTGGAAGGGTGAAGGAGTTGCTGGCACAAGGCGTTTCACAAAGTCGTTATCATGAGAAGACTCCTGAACAGGAAAGGTTGGAAAGAAGACGACAGATGCCGTATCATATGCACATCAATCTAGAGCTCCTAGAGGCAGTACATCTCGTATCTGCTATGCTGCTGGAAGTGCCCAATATGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAGACTTTCCGTCGCTTGCTTGAGGTAAGTGAGAAACAAACATTTACTGGTCCACCGGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGATTCTTCGCAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGAGACACGGTACTTGAAATGCTAAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTTTCTTCATCTTATGAATCGTTGAGCCTGGATCAGCTCACAAAATTTTTTGATCTCTCTGTTTCGCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTCTTTTCCAAGATGTCGAACACTCCAGGCTGCAGGCATTGGTATTCCAATTGACAGAGAAATTATCTGTCCTTGCAGAGAGTAATGAAAAAGCAACAGAGGCCAGGGTAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCTGCCGCCGCTGCTGCCGGCAGTGGAACAGCCTCTACAGGTGGTAGGTGGCAAGACCTGTCCCCTTCTCAGCCAAGGCAAGGCAGTGGGCGTGCAGGGTATGGTGGAAGACCAATGACATTAGGCCAAGCAGCTGGGAGTGGCTATTCAAGGGGACGAGGAAGAGGTTCGTATGGAGGTTCAGGGAGGACTTCTCAAAGGGGTTCAGCATTGAGGGGACCCCAGGGCGATGGACCTGCTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTGA
>Glyma08g05740.1 sequence type=predicted peptide gene model=Glyma08g05740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASRFWTQGGSDSEEEESDYDEEVDTTVGEASGQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESERVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESEEEKEEEESDEEYDSDGEIIDPDQLQKPEAKSDSEASQYEDEKPDAGEGPWDQKLSKKDRLLDRQFMKNPSEITWDAVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLIILDILVQYPNIMVDDSVEPDENETQKGAEHNGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEDGDNGGEASEKEFEESRIPTAFVVTPEVVTRKPTFPENSRTLMDILVSMIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRILRKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKFFDLSVSRTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALVFQLTEKLSVLAESNEKATEARVGGGGLDLPLRRRDGQDYAAAAAAGSGTASTGGRWQDLSPSQPRQGSGRAGYGGRPMTLGQAAGSGYSRGRGRGSYGGSGRTSQRGSALRGPQGDGPARMVSLKGVRA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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