Report for Sequence Feature Glyma08g05690
Feature Type: gene_model
Chromosome: Gm08
Start: 4057313
stop: 4058807
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g05690
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G02750 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781
SoyBase E_val: 5.00E-86 ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF42 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_A4PRI6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Tetratricopeptide-like helical n=1 Tax=Medicago truncatula RepID=A4PRI6_MEDTR
SoyBase E_val: 8.00E-124 ISS
UniRef100_I1KQJ0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KQJ0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g05690
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g05690
Paralog Evidence Comments
Glyma05g34010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g05690 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma08g05690
Coding sequences of Glyma08g05690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g05690.2 sequence type=CDS gene model=Glyma08g05690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTAGAGATACTATTCAACGACCAACCAATTATCCAAAACCCCATTTCAAAGGCCCACACATTGTGAAACGCACCAAAGCTATCTCTACCCACATGCGCAATGGCCACTGCGACTTGGCTCTCCGTGTCTTCGAAGCCATCCCGCTTCGAAACTCTGTCTCTTACAACGCCATGATATCTGGGTACTTGAGGAACACAAAGCTCTCCCTTGCAAGGGACCTGTTTGACAAAATGCCCCACAACTTACTGGTGGGCATGTTGACGAGGCAAGGGATGTTTTTGATAGGATGCCTCACAAGTCACAAGAATTCCGGCCATCTCCTGGAATGGACTGGGAATTGTTTGATGGGTGGGTATGTGAAGACAAACATGTTAGGTGATGCCAAGCAGCTTTTTGACCAGATGCCTGTCAGGGATGTAATCTCCTGGAACACCATGATTTCAGGTTATGAACAGGATCGAGATTTGTCACAGGCTAGGAGGTGGTTTGAGGAATCTCCAGTGAGGGATAAAAGAGAGATGTCGTACAATGTAATGATTCCTGGTTATGCACAATACAAGAGAATGGACATGGCAAGGGAGTTGTTTGAGGCAATGCCTTTTCCGAATATAGGTTCGTGGAATATCATGATAAGTGGCTATTGTCAGAACGGTGATGTAGCACAAGCTAGGAACTTGTTTGATATGATGCCTCGGCGTGATTCTGTATCTTGGGCAGCTATCATTGCTGGTTATGCTCAGAATGGTCTCTATGAAGAAGCTATGAACAGGTTTGTGGAGATGAAACGAGATGGAGAAAGTTTAAATAGATCTACCTTTTGTTGTGCTTTGAGCGCATGTGCTGATATATCTGCTTTGGAGTTAGGGAAACAAGTTCATGGACAGGTGGTGAAGACGGGGTATGAGAAAGGCTGTTTAGTGGGAAAT
Predicted protein sequences of Glyma08g05690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g05690.2 sequence type=predicted peptide gene model=Glyma08g05690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MARDTIQRPTNYPKPHFKGPHIVKRTKAISTHMRNGHCDLALRVFEAIPLRNSVSYNAMISGYLRNTKLSLARDLFDKMPHNLLVGMLTRQGMFLIGCLTSHKNSGHLLEWTGNCLMGGYVKTNMLGDAKQLFDQMPVRDVISWNTMISGYEQDRDLSQARRWFEESPVRDKREMSYNVMIPGYAQYKRMDMARELFEAMPFPNIGSWNIMISGYCQNGDVAQARNLFDMMPRRDSVSWAAIIAGYAQNGLYEEAMNRFVEMKRDGESLNRSTFCCALSACADISALELGKQVHGQVVKTGYEKGCLVGN
SoyBase
SoyBase transitions to NEW site on 10/1/2024
