Report for Sequence Feature Glyma08g05630
Feature Type: gene_model
Chromosome: Gm08
Start: 4020254
stop: 4021495
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g05630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G44730 AT
Annotation by Michelle Graham. TAIR10: Alcohol dehydrogenase transcription factor Myb/SANT-like family protein | chr2:18437447-18438565 REVERSE LENGTH=372
SoyBase E_val: 6.00E-85 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
KOG4282
KOG
Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
JGI ISS
PF10545 PFAM
Alcohol dehydrogenase transcription factor Myb/SANT-like
JGI ISS
UniRef100_B9SKE7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SKE7_RICCO
SoyBase E_val: 2.00E-113 ISS
UniRef100_UPI0002338B4E UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338B4E related cluster n=1 Tax=unknown RepID=UPI0002338B4E
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g05630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma08g05630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g051800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g05630
Coding sequences of Glyma08g05630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g05630.1 sequence type=CDS gene model=Glyma08g05630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACGACGCCTCCTCCTCTCCCCCTCCTCCTCCTCCCCCTCCCGATCCCCCCTCCGCCGTCCCCCTCTCCCTCGTCCCCCTCCCCGCCCCACCCTCCTCCACTCGCCGCCTCCCCCCTCCCTGCTGGTCCCCCGATGAAACCCTCGCCCTCATCGACGCCTACCGCGACAAGTGGTACTCCCTCGGCCGCGGCAACCTCAAGGCCACCCACTGGCAGGAGGTCGCCGACGCTGTCTCTAGCCGCTGCCCCAACGCCTCCCCTCCCAAAACTCCTGTCCAGTGCCGCCACAAAATGGAGAAGCTGCGCAAGCGCTACCGCACCGAGATCCAACGCGCTCGCTCCCTCCCCGTTTCCCGATTCAACTCCTCCTGGGCCCACTTCAAGCTCATGGACTCCATGGAAAAAGGCCCCTCCCCTGTTAAACCCGATATCAACGATTCCGATCATAATAATACTGATAACGATGACGATGACGATGATGCTGGTCAAGATCTCTACCACCACCAGATCAACCACAACGGCCACACCAGAAGCTTGAACAAGCTCTATAGGAACGGCTTTCCAGGTTCCGGTGGTGGTGCCGGTGGGTTTAGGATTCGAATTCCCACTGGGTTGAGCGCGCCGCAGCAGCAGCATCCTGGATCTGCTTCCAAGGTGTTTGGGAAGGTTGGGAATCAGAGATTCAGCCCCAATTTGAATCAAAACCCTAACCCTAATCTTGGGAAGAAGAGGGAGAGAGACCCCGTGGGTGAAGTGGTGGCTGCGATTAAGGTATTGGGAGATGGGTTTGTGAGAATGGAACAGATGAAGATGGAGATGGCCAGGGAGATCGAGACCATGCGGATGGAGATGGAAATGAAGCGCACTGAGATGATTCTAGAATCGCAACAGCGGATTGTCGAGGCATTTGCCAAGGCCGTTTCGGAAAAGAACAGGAAGAAGAAGCCCAAGACTGTGCCATCAGCCTCTGGTTGA
Predicted protein sequences of Glyma08g05630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g05630.1 sequence type=predicted peptide gene model=Glyma08g05630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDDASSSPPPPPPPPDPPSAVPLSLVPLPAPPSSTRRLPPPCWSPDETLALIDAYRDKWYSLGRGNLKATHWQEVADAVSSRCPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFNSSWAHFKLMDSMEKGPSPVKPDINDSDHNNTDNDDDDDDAGQDLYHHQINHNGHTRSLNKLYRNGFPGSGGGAGGFRIRIPTGLSAPQQQHPGSASKVFGKVGNQRFSPNLNQNPNPNLGKKRERDPVGEVVAAIKVLGDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKNRKKKPKTVPSASG*