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Report for Sequence Feature Glyma08g05620

Feature Type:gene_model
Chromosome:Gm08
Start:4016260
stop:4019895
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g05620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73680AT Annotation by Michelle Graham. TAIR10: alpha dioxygenase | chr1:27704221-27707417 REVERSE LENGTH=631 SoyBaseE_val: 0ISS
GO:0001676GO-bp Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process SoyBaseN/AISS
GO:0006631GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0004601GO-mf Annotation by Michelle Graham. GO Molecular Function: peroxidase activity SoyBaseN/AISS
GO:0016702GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
GO:0051213GO-mf Annotation by Michelle Graham. GO Molecular Function: dioxygenase activity SoyBaseN/AISS
KOG2408 KOG Peroxidase/oxygenase JGI ISS
PTHR11903Panther PROSTAGLANDIN G/H SYNTHASE JGI ISS
PTHR11903:SF2Panther FEEBLY-LIKE PROTEIN JGI ISS
PF03098PFAM Animal haem peroxidase JGI ISS
UniRef100_G7LD99UniRef Annotation by Michelle Graham. Most informative UniRef hit: Prostaglandin G/H synthase n=2 Tax=Medicago truncatula RepID=G7LD99_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI00023380DCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023380DC related cluster n=1 Tax=unknown RepID=UPI00023380DC SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g05620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g05620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g051700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g05620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g05620
>Glyma08g05620.2   sequence type=CDS   gene model=Glyma08g05620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTTTTCTGTTTTCTCTGCACCCTATGTTCATCCCGAACTCCACCCTATTGTAGCCAAAATGACCCTTTTTGACACCATACTCTTCTATGTGATACATTTTGTGGACAAGCTTGAGTTGTGGCAAAGGCTGCCAGTGTTGTTGGGGTTAGCATACTTGGGAATTAGAAGGCACTTGCATTATCGTTACAATTTGTTGCATGCTGGAGGAGTCAATGGCCACAAGTATGATACACAAGAGTATGCCTATACGACACCGGATGGTATGTGCAACCACCCTGCTGACCATTTGATCAGCAGTCAGGGGACGTCTTTTGGCCGGAACATGCCTCCGACGACCTTAGATTATGGTACCAACATCCAACTACTTTTTCTCATGTTAATAAAGTTACTGGACCCTCACCCAACCGTGGTAGCCTCAAAGCTCCTAGAAAGAAAAAATTTCAAAGAGGCAGGGAAGCAATTCAACATGATAGCTTGCTCATGGATGCAGCTCATGATTCATGATTGGATTGACCATTTAGAGGATACTGAACAGGTGGAAATTAGAGCTCCTGATGGTTATTCAAGTGGATGTCCTTTAAAATCTTTCATGTATTTCAAGACTAAGAAGTTCAAAACAGACGCTTCATGTATGAAGTTTGGCTTCCAAAACATCAGGACTCCTTGGTGGGATGGAAGTGTCATATATGGGAATAACGAGAAGGGCATGAAAAGAGCGAGGACGTTCAAAGATGGAAAGCTGAAGATCTCAGAAGATGGGCTTCTTGAGCATGATGAGAAAGGTATTCCTATATCTGGTGATGTTAGAAATTGCTGGGCTGGCTTTTCCCTTTTGCAGGCCTTGTTTGTCAAAGAGCACAATGCCCTATGTGATATGCTAAAAAATGCAAGATTGGTGACTTCAGCAATCATTGCAAAAGTTCACACAATTGATTGGACTGTAGAACTCCTAAAGACTGATACTCTTCTGGCAGGGATGAGAATAAACGGATGTGAATTTCTGGGGAAGAAATTTAAAGATTTATTTGGAAACATTTGTGGACCCTTACTTAGTGGATTAGTTGAATTTGTCAGTGTTTACAGAATGCATTCACTGCTACCTGATGAAATTGTCCTTCGAGATATCAAGCCTACAAGAGGAGAATATAAATGCCCTCCAATACTTGAAAAGGAACCTATGAAGGAACTGTTGGGAAAAGAAGGGGAAAGAAGGCTATCAAACTTAGGAATGGAGCAGATGCTAGTATCCATGGGTCATCAATCAAGTGGTGCAGTTGACTTGTGGAACTATCCAACATGGTTAGGGAACCTCATTGCCCATGATATTAATGGAGAAGATATACCTGATCCTGTTGACATGGCTACCATGGAAGTTTATAGAGATAGGGAAAGGGGAGTTGCAAGGTATAATGAATTCAGAAGAAACTTACTAATGATCCCTATTAGCAAGTGGGAGGATTTAACAGATGATGAAGAGGTCATTGAAGCTCTTAGAGATGTATATGAAGATGATGCTGAAAAGCTGGACTTGATAGTGGGTCTCCATGCAGAGAAGAGGATAAGAGGCTTTGCTATCAGTGAGACTGCTTTCTTTATATTCTTAATCATGGCTTGGAAAGCTGATCGTTTCTTCACAACGAATTTCAACTCCAAAACATACACAGATAAAGGGCTTGAATGGGTAAACAAAACAGAGACTTTGAAGGATGTGATTGACAGACACTTTCCTGAAATGACTAAAAACTGGATGAGGTCCTCAAGGGCATTCTGTGTTTGGGATTCAATGCCAGATCCCACAAACTACATACCTCTATATTTGAGATCAGCCCCATAA
Predicted protein sequences of Glyma08g05620
>Glyma08g05620.2   sequence type=predicted peptide   gene model=Glyma08g05620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFSVFSAPYVHPELHPIVAKMTLFDTILFYVIHFVDKLELWQRLPVLLGLAYLGIRRHLHYRYNLLHAGGVNGHKYDTQEYAYTTPDGMCNHPADHLISSQGTSFGRNMPPTTLDYGTNIQLLFLMLIKLLDPHPTVVASKLLERKNFKEAGKQFNMIACSWMQLMIHDWIDHLEDTEQVEIRAPDGYSSGCPLKSFMYFKTKKFKTDASCMKFGFQNIRTPWWDGSVIYGNNEKGMKRARTFKDGKLKISEDGLLEHDEKGIPISGDVRNCWAGFSLLQALFVKEHNALCDMLKNARLVTSAIIAKVHTIDWTVELLKTDTLLAGMRINGCEFLGKKFKDLFGNICGPLLSGLVEFVSVYRMHSLLPDEIVLRDIKPTRGEYKCPPILEKEPMKELLGKEGERRLSNLGMEQMLVSMGHQSSGAVDLWNYPTWLGNLIAHDINGEDIPDPVDMATMEVYRDRERGVARYNEFRRNLLMIPISKWEDLTDDEEVIEALRDVYEDDAEKLDLIVGLHAEKRIRGFAISETAFFIFLIMAWKADRFFTTNFNSKTYTDKGLEWVNKTETLKDVIDRHFPEMTKNWMRSSRAFCVWDSMPDPTNYIPLYLRSAP*






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