SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73680 | AT | Annotation by Michelle Graham. TAIR10: alpha dioxygenase | chr1:27704221-27707417 REVERSE LENGTH=631 | SoyBase | E_val: 0 | ISS |
| GO:0001676 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0006631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0010150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf senescence | SoyBase | N/A | ISS |
| GO:0051707 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to other organism | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0004601 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peroxidase activity | SoyBase | N/A | ISS |
| GO:0016702 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| GO:0051213 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dioxygenase activity | SoyBase | N/A | ISS |
| KOG2408 | KOG | Peroxidase/oxygenase | JGI | ISS | |
| PTHR11903 | Panther | PROSTAGLANDIN G/H SYNTHASE | JGI | ISS | |
| PTHR11903:SF2 | Panther | FEEBLY-LIKE PROTEIN | JGI | ISS | |
| PF03098 | PFAM | Animal haem peroxidase | JGI | ISS | |
| UniRef100_G7LD99 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Prostaglandin G/H synthase n=2 Tax=Medicago truncatula RepID=G7LD99_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023380DC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023380DC related cluster n=1 Tax=unknown RepID=UPI00023380DC | SoyBase | E_val: 0 | ISS |
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Glyma08g05620 not represented in the dataset |
Glyma08g05620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g051700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g05620.2 sequence type=CDS gene model=Glyma08g05620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTTTTCTGTTTTCTCTGCACCCTATGTTCATCCCGAACTCCACCCTATTGTAGCCAAAATGACCCTTTTTGACACCATACTCTTCTATGTGATACATTTTGTGGACAAGCTTGAGTTGTGGCAAAGGCTGCCAGTGTTGTTGGGGTTAGCATACTTGGGAATTAGAAGGCACTTGCATTATCGTTACAATTTGTTGCATGCTGGAGGAGTCAATGGCCACAAGTATGATACACAAGAGTATGCCTATACGACACCGGATGGTATGTGCAACCACCCTGCTGACCATTTGATCAGCAGTCAGGGGACGTCTTTTGGCCGGAACATGCCTCCGACGACCTTAGATTATGGTACCAACATCCAACTACTTTTTCTCATGTTAATAAAGTTACTGGACCCTCACCCAACCGTGGTAGCCTCAAAGCTCCTAGAAAGAAAAAATTTCAAAGAGGCAGGGAAGCAATTCAACATGATAGCTTGCTCATGGATGCAGCTCATGATTCATGATTGGATTGACCATTTAGAGGATACTGAACAGGTGGAAATTAGAGCTCCTGATGGTTATTCAAGTGGATGTCCTTTAAAATCTTTCATGTATTTCAAGACTAAGAAGTTCAAAACAGACGCTTCATGTATGAAGTTTGGCTTCCAAAACATCAGGACTCCTTGGTGGGATGGAAGTGTCATATATGGGAATAACGAGAAGGGCATGAAAAGAGCGAGGACGTTCAAAGATGGAAAGCTGAAGATCTCAGAAGATGGGCTTCTTGAGCATGATGAGAAAGGTATTCCTATATCTGGTGATGTTAGAAATTGCTGGGCTGGCTTTTCCCTTTTGCAGGCCTTGTTTGTCAAAGAGCACAATGCCCTATGTGATATGCTAAAAAATGCAAGATTGGTGACTTCAGCAATCATTGCAAAAGTTCACACAATTGATTGGACTGTAGAACTCCTAAAGACTGATACTCTTCTGGCAGGGATGAGAATAAACGGATGTGAATTTCTGGGGAAGAAATTTAAAGATTTATTTGGAAACATTTGTGGACCCTTACTTAGTGGATTAGTTGAATTTGTCAGTGTTTACAGAATGCATTCACTGCTACCTGATGAAATTGTCCTTCGAGATATCAAGCCTACAAGAGGAGAATATAAATGCCCTCCAATACTTGAAAAGGAACCTATGAAGGAACTGTTGGGAAAAGAAGGGGAAAGAAGGCTATCAAACTTAGGAATGGAGCAGATGCTAGTATCCATGGGTCATCAATCAAGTGGTGCAGTTGACTTGTGGAACTATCCAACATGGTTAGGGAACCTCATTGCCCATGATATTAATGGAGAAGATATACCTGATCCTGTTGACATGGCTACCATGGAAGTTTATAGAGATAGGGAAAGGGGAGTTGCAAGGTATAATGAATTCAGAAGAAACTTACTAATGATCCCTATTAGCAAGTGGGAGGATTTAACAGATGATGAAGAGGTCATTGAAGCTCTTAGAGATGTATATGAAGATGATGCTGAAAAGCTGGACTTGATAGTGGGTCTCCATGCAGAGAAGAGGATAAGAGGCTTTGCTATCAGTGAGACTGCTTTCTTTATATTCTTAATCATGGCTTGGAAAGCTGATCGTTTCTTCACAACGAATTTCAACTCCAAAACATACACAGATAAAGGGCTTGAATGGGTAAACAAAACAGAGACTTTGAAGGATGTGATTGACAGACACTTTCCTGAAATGACTAAAAACTGGATGAGGTCCTCAAGGGCATTCTGTGTTTGGGATTCAATGCCAGATCCCACAAACTACATACCTCTATATTTGAGATCAGCCCCATAA
>Glyma08g05620.2 sequence type=predicted peptide gene model=Glyma08g05620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVFSVFSAPYVHPELHPIVAKMTLFDTILFYVIHFVDKLELWQRLPVLLGLAYLGIRRHLHYRYNLLHAGGVNGHKYDTQEYAYTTPDGMCNHPADHLISSQGTSFGRNMPPTTLDYGTNIQLLFLMLIKLLDPHPTVVASKLLERKNFKEAGKQFNMIACSWMQLMIHDWIDHLEDTEQVEIRAPDGYSSGCPLKSFMYFKTKKFKTDASCMKFGFQNIRTPWWDGSVIYGNNEKGMKRARTFKDGKLKISEDGLLEHDEKGIPISGDVRNCWAGFSLLQALFVKEHNALCDMLKNARLVTSAIIAKVHTIDWTVELLKTDTLLAGMRINGCEFLGKKFKDLFGNICGPLLSGLVEFVSVYRMHSLLPDEIVLRDIKPTRGEYKCPPILEKEPMKELLGKEGERRLSNLGMEQMLVSMGHQSSGAVDLWNYPTWLGNLIAHDINGEDIPDPVDMATMEVYRDRERGVARYNEFRRNLLMIPISKWEDLTDDEEVIEALRDVYEDDAEKLDLIVGLHAEKRIRGFAISETAFFIFLIMAWKADRFFTTNFNSKTYTDKGLEWVNKTETLKDVIDRHFPEMTKNWMRSSRAFCVWDSMPDPTNYIPLYLRSAP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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