Glyma08g05600 - SoyBase

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Report for Sequence Feature Glyma08g05600

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4001556
stop:	4006361
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48635	AT	Annotation by Michelle Graham. TAIR10: peroxin 3 \| chr1:17983951-17985966 FORWARD LENGTH=364	SoyBase	E_val: 8.00E-142	ISS
GO:0007031	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome organization	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005779	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to peroxisomal membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4444	KOG	Peroxisomal assembly protein PEX3	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PTHR22950:SF1	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF04882	PFAM	Peroxin-3	JGI		ISS
UniRef100_B9SU93	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9SU93_RICCO	SoyBase	E_val: 1.00E-155	ISS
UniRef100_I1KQI1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQI1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05600

Paralog	Evidence	Comments
Glyma05g34080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g051500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05600

Limit To All Plant Sequences

>Glyma08g05600.1   sequence type=CDS   gene model=Glyma08g05600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTCTGTGAGGGATTTTTGGAGGCGGCATAGGAGGAAGGTTTTCGTCACTGTTGGTGTTTTAGGAAGTGGGTATCTTTTGTATAAGCTCTACGGTGCTCAGAGACATGGGGTTCAGGAACTTGAAAGAGAACTCGCAGTTCAGAGGGAAACTGAGGACCTTATGAAGGCTCAGATGCAAGCTCACTTTGAGAATATTCAGAAGATGTCTGATGTAACATTGCCGCATGCTATGCACGAGTTAAGTTGTCGGATCACAGAAGAGTTGGATCTTTCTCACCTTCTTGAAAGGCTAATTCAAGGAAAGGGTCAGCCAAACACCTTGACTCAATCAGAGAAACTAGATCTATGGAGTAGACTCAAAATTCTGAGTTTTACAAGAATGACATTGTCAGTATGGGCTACAACAATGCTTAGCTTATATACAAAAGTTCAAGTCAATATTCTAGGAAGGCATTTATACATTGATACAGCACGTAGTCTCGGAATCTCTGATTCAGTGGAAAGTGGAGATGTGGTTGATAGGGAAGACCAAAAGAAATTTCTAGATAATATTGATTTTCTCTCTCAGCATGGTATGCCTGCCTTGATTTCTGATATGGAGGCAGCAACAAAAGAAGTTCTCAAAGGAAAGCAGTTGAGTACTTTCTTCAACAGCACAACACTTCATGAAACTATCATGCAGATACTCAACTCCTTCATGAGCATGGGGACTCCAAATTCCTGGATAAAGTATATGATACCTGAAGATGTTAGACCATATTCCACAACCTATGGTAGTGATGACCCAGTGCCATTTGACATGACTGAATTTGAACAACTTATGATGGAAGCATGGGCAGTATTATCAAGTGCTGAATTTGGAAGCATTGTAGAGATATCTCTGAAAGCAGTGGTGGATACACTGGTGGAGCTCATGGGGACTAAATTTAGTGGAGGAAGTGTAGCCGGGGGCCTGCCTCTGGCCAGAGTGTTGCCTCAAGTTGCACAGATGTGTCCTTTGCTCCTTGAAGAACCCAGAAAAAATCAGTTCATCCAAATCATTAAAAATATACAGGAGGTTGAACTTTTTTTCACACTCCTCTATGCAAATATGCCACATGCATAG

Predicted protein sequences of Glyma08g05600

Limit To All Plant Sequences

>Glyma08g05600.1   sequence type=predicted peptide   gene model=Glyma08g05600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSVRDFWRRHRRKVFVTVGVLGSGYLLYKLYGAQRHGVQELERELAVQRETEDLMKAQMQAHFENIQKMSDVTLPHAMHELSCRITEELDLSHLLERLIQGKGQPNTLTQSEKLDLWSRLKILSFTRMTLSVWATTMLSLYTKVQVNILGRHLYIDTARSLGISDSVESGDVVDREDQKKFLDNIDFLSQHGMPALISDMEAATKEVLKGKQLSTFFNSTTLHETIMQILNSFMSMGTPNSWIKYMIPEDVRPYSTTYGSDDPVPFDMTEFEQLMMEAWAVLSSAEFGSIVEISLKAVVDTLVELMGTKFSGGSVAGGLPLARVLPQVAQMCPLLLEEPRKNQFIQIIKNIQEVELFFTLLYANMPHA*

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