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Report for Sequence Feature Glyma08g05590

Feature Type:gene_model
Chromosome:Gm08
Start:3997047
stop:3999473
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18165AT Annotation by Michelle Graham. TAIR10: modifier of snc1,4 | chr3:6223248-6225076 FORWARD LENGTH=253 SoyBaseE_val: 1.00E-110ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0009870GO-bp Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-dependent SoyBaseN/AISS
GO:0010204GO-bp Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG3096 KOG Spliceosome-associated coiled-coil protein JGI ISS
PTHR13296Panther BCAS2 PROTEIN JGI ISS
PF05700PFAM Breast carcinoma amplified sequence 2 (BCAS2) JGI ISS
UniRef100_G7LD93UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA-splicing factor SPF27-like protein n=1 Tax=Medicago truncatula RepID=G7LD93_MEDTR SoyBaseE_val: 8.00E-152ISS
UniRef100_I1KQH7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQH7_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g34090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g051400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g05590.3   sequence type=transcript   gene model=Glyma08g05590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGCCCAATGATATGATATCAGATATGAGTTTTCTTTATAATTACTTTTAATCATAAAATATGACACGGGGTTTGGGCTTCATAAAATAGCCCAACAACACCAACACAGTCTTTCTTTAACCTTCCTCTTTAAGCGTAGAGGAAAAGCTTCAGTCTCTGACCATGGCGGATGGAAGCAGCGGGGAAATTCTAATGCTGGAAGCCCCAGCGTCTTACGGTAGGTCTAGCGATTCCGACGCGGAAATAATCGACGCATTGCCTTATATCGACGACGACTACGCAGACCCCAGAGTCAAACTGGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAATGATTTCCCTCCTCTTCCCAACTCCATTTTCCAGAACTACCCAATGATTGCCAGAGAGTACGAACGTGTGAGAGCTGGAAGGCCTCCCGTTGCTCTTGATAGATCGCGCTACGATTTGGAAATGCCGCCGCCCAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACGCCTGCTGCAATATCAGATCATCAGGATGGAAAATTTGGACTTGATGTTAAAATATGGTCCCGATACCTGGAAACAGCACAACCAGAGATTGGAAGTATACTTGTCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAACTGAAAAGAGAAGCAGCAGAAAGGTGACTACTACGCATAGTTTGGTTTTCTCGGCTGATTTCCTCTAGTTTTGGTGTTGTTAGTTTGTTTTTTTTTTTTCAGAGGCTGGAACTTGGGAGCTGTAACAGAAAATGACCAATTGGCAAATTCCGAATTATGAGATTCGTATGTTCTCATCTAGTTTTGTATCTGTAATGAATTTGTTCTGCTTAAAACTAGATTTGCTATTGTACCTGAGATGTTTAGTACAATATCATGAAAAAGTTATCCATTTGCTCACCCTCGGAACAAATATGATGTTTTTTTTATAGAGAAAACCGGTTCAAAAAAGAGGGGAGGGGCTGCATCTAGTTATTCAATCCTTATTGAAATTAGTACTTTCCCATCTTCCCCCCCTAATGCATTAGCAGATCAAGATACCTGTTTGTTTCGGTGATATACGAACTTGATTCCATCGGCAATTCAACATGGGATGGTTCTGTAGGTGAAGCAAGTCCACACTGCGTTAGGTTAGAATTCATTTTCGAGGCATTGTAAACGAAATTTCAAAAAGTGAAAAAACTTTTTGTGTAGTTGCTGCATTTTATATTTGGCATTCAGGCAATTGTTGTCTAATATCATCTCTTAGTACTGTTTAACTTTAACCAATCAAACGAAAACAAATATATATATAAGCAAGAAAAAG

>Glyma08g05590.4   sequence type=transcript   gene model=Glyma08g05590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGCCCAATGATATGATATCAGATATGAGTTTTCTTTATAATTACTTTTAATCATAAAATATGACACGGGGTTTGGGCTTCATAAAATAGCCCAACAACACCAACACAGTCTTTCTTTAACCTTCCTCTTTAAGCGTAGAGGAAAAGCTTCAGTCTCTGACCATGGCGGATGGAAGCAGCGGGGAAATTCTAATGCTGGAAGCCCCAGCGTCTTACGGTAGGTCTAGCGATTCCGACGCGGAAATAATCGACGCATTGCCTTATATCGACGACGACTACGCAGACCCCAGAGTCAAACTGGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAATGATTTCCCTCCTCTTCCCAACTCCATTTTCCAGAACTACCCAATGATTGCCAGAGAGTACGAACGTGTGAGAGCTGGAAGGCCTCCCGTTGCTCTTGATAGATCGCGCTACGATTTGGAAATGCCGCCGCCCAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACGCCTGCTGCAATATCAGATCATCAGGATGGAAAATTTGGACTTGATGTTAAAATATGGTCCCGATACCTGGAAACAGCACAACCAGAGATTGGAAGTATACTTGTCAAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAACTGAAAAGAGAAGCAGCAGAAAGAGGCTGGAACTTGGGAGCTGTAACAGAAAATGACCAATTGGCAAATTCCGAATTATGAGATTCGTATGTTCTCATCTAGTTTTGTATCTGTAATGAATTTGTTCTGCTTAAAACTAGATTTGCTATTGTACCTGAGATGTTTAGTACAATATCATGAAAAAGTTATCCATTTGCTCACCCTCGGAACAAATATGATGTTTTTTTTATAGAGAAAACCGGTTCAAAAAAGAGGGGAGGGGCTGCATCTAGTTATTCAATCCTTATTGAAATTAGTACTTTCCCATCTTCCCCCCCTAATGCATTAGCAGATCAAGATACCTGTTTGTTTCGGTGATATACGAACTTGATTCCATCGGCAATTCAACATGGGATGGTTCTGTAGGTGAAGCAAGTCCACACTGCGTTAGGTTAGAATTCATTTTCGAGGCATTGTAAACGAAATTTCAAAAAGTGAAAAAACTTTTTGTGTAGTTGCTGCATTTTATATTTGGCATTCAGGCAATTGTTGTCTAATATCATCTCTTAGTACTGTTTAACTTTAACCAATCAAACGAAAACAAATATATATATAAGCAAGAAAAAG

>Glyma08g05590.1   sequence type=CDS   gene model=Glyma08g05590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATGGAAGCAGCGGGGAAATTCTAATGCTGGAAGCCCCAGCGTCTTACGGTAGGTCTAGCGATTCCGACGCGGAAATAATCGACGCATTGCCTTATATCGACGACGACTACGCAGACCCCAGAGTCAAACTGGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAATGATTTCCCTCCTCTTCCCAACTCCATTTTCCAGAACTACCCAATGATTGCCAGAGAGTACGAACGTGTGAGAGCTGGAAGGCCTCCCGTTGCTCTTGATAGATCGCGCTACGATTTGGAAATGCCGCCGCCCAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACGCCTGCTGCAATATCAGATCATCAGGATGGAAAATTTGGACTTGATGTTAAAATATGGTCCCGATACCTGGAAACAGCACAACCAGAGATTGGAAGTATACTTGTCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAACTGAAAAGAGAAGCAGCAGAAAGAGGCTGGAACTTGGGAGCTGTAACAGAAAATGACCAATTGGCAAATTCCGAATTATGA

>Glyma08g05590.3   sequence type=CDS   gene model=Glyma08g05590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATGGAAGCAGCGGGGAAATTCTAATGCTGGAAGCCCCAGCGTCTTACGGTAGGTCTAGCGATTCCGACGCGGAAATAATCGACGCATTGCCTTATATCGACGACGACTACGCAGACCCCAGAGTCAAACTGGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAATGATTTCCCTCCTCTTCCCAACTCCATTTTCCAGAACTACCCAATGATTGCCAGAGAGTACGAACGTGTGAGAGCTGGAAGGCCTCCCGTTGCTCTTGATAGATCGCGCTACGATTTGGAAATGCCGCCGCCCAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACGCCTGCTGCAATATCAGATCATCAGGATGGAAAATTTGGACTTGATGTTAAAATATGGTCCCGATACCTGGAAACAGCACAACCAGAGATTGGAAGTATACTTGTCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAACTGAAAAGAGAAGCAGCAGAAAGGTGA

>Glyma08g05590.4   sequence type=CDS   gene model=Glyma08g05590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATGGAAGCAGCGGGGAAATTCTAATGCTGGAAGCCCCAGCGTCTTACGGTAGGTCTAGCGATTCCGACGCGGAAATAATCGACGCATTGCCTTATATCGACGACGACTACGCAGACCCCAGAGTCAAACTGGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAATGATTTCCCTCCTCTTCCCAACTCCATTTTCCAGAACTACCCAATGATTGCCAGAGAGTACGAACGTGTGAGAGCTGGAAGGCCTCCCGTTGCTCTTGATAGATCGCGCTACGATTTGGAAATGCCGCCGCCCAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACGCCTGCTGCAATATCAGATCATCAGGATGGAAAATTTGGACTTGATGTTAAAATATGGTCCCGATACCTGGAAACAGCACAACCAGAGATTGGAAGTATACTTGTCAAGAAATTAG

>Glyma08g05590.1   sequence type=predicted peptide   gene model=Glyma08g05590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADGSSGEILMLEAPASYGRSSDSDAEIIDALPYIDDDYADPRVKLEVDRLVEDEMRRSTKKPTDFLNDFPPLPNSIFQNYPMIAREYERVRAGRPPVALDRSRYDLEMPPPNKRNDETAWKQALHRAQRLLQYQIIRMENLDLMLKYGPDTWKQHNQRLEVYLSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENRINELKREAAERGWNLGAVTENDQLANSEL*

>Glyma08g05590.3   sequence type=predicted peptide   gene model=Glyma08g05590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADGSSGEILMLEAPASYGRSSDSDAEIIDALPYIDDDYADPRVKLEVDRLVEDEMRRSTKKPTDFLNDFPPLPNSIFQNYPMIAREYERVRAGRPPVALDRSRYDLEMPPPNKRNDETAWKQALHRAQRLLQYQIIRMENLDLMLKYGPDTWKQHNQRLEVYLSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENRINELKREAAER*

>Glyma08g05590.4   sequence type=predicted peptide   gene model=Glyma08g05590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADGSSGEILMLEAPASYGRSSDSDAEIIDALPYIDDDYADPRVKLEVDRLVEDEMRRSTKKPTDFLNDFPPLPNSIFQNYPMIAREYERVRAGRPPVALDRSRYDLEMPPPNKRNDETAWKQALHRAQRLLQYQIIRMENLDLMLKYGPDTWKQHNQRLEVYLSRN*







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