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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G18165 | AT | Annotation by Michelle Graham. TAIR10: modifier of snc1,4 | chr3:6223248-6225076 FORWARD LENGTH=253 | SoyBase | E_val: 1.00E-110 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0009870 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-dependent | SoyBase | N/A | ISS |
| GO:0010204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG3096 | KOG | Spliceosome-associated coiled-coil protein | JGI | ISS | |
| PTHR13296 | Panther | BCAS2 PROTEIN | JGI | ISS | |
| PF05700 | PFAM | Breast carcinoma amplified sequence 2 (BCAS2) | JGI | ISS | |
| UniRef100_G7LD93 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA-splicing factor SPF27-like protein n=1 Tax=Medicago truncatula RepID=G7LD93_MEDTR | SoyBase | E_val: 8.00E-152 | ISS |
| UniRef100_I1KQH7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQH7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g05590 not represented in the dataset |
Glyma08g05590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g34090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g051400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g05590.3 sequence type=transcript gene model=Glyma08g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAGCCCAATGATATGATATCAGATATGAGTTTTCTTTATAATTACTTTTAATCATAAAATATGACACGGGGTTTGGGCTTCATAAAATAGCCCAACAACACCAACACAGTCTTTCTTTAACCTTCCTCTTTAAGCGTAGAGGAAAAGCTTCAGTCTCTGACCATGGCGGATGGAAGCAGCGGGGAAATTCTAATGCTGGAAGCCCCAGCGTCTTACGGTAGGTCTAGCGATTCCGACGCGGAAATAATCGACGCATTGCCTTATATCGACGACGACTACGCAGACCCCAGAGTCAAACTGGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAATGATTTCCCTCCTCTTCCCAACTCCATTTTCCAGAACTACCCAATGATTGCCAGAGAGTACGAACGTGTGAGAGCTGGAAGGCCTCCCGTTGCTCTTGATAGATCGCGCTACGATTTGGAAATGCCGCCGCCCAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACGCCTGCTGCAATATCAGATCATCAGGATGGAAAATTTGGACTTGATGTTAAAATATGGTCCCGATACCTGGAAACAGCACAACCAGAGATTGGAAGTATACTTGTCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAACTGAAAAGAGAAGCAGCAGAAAGGTGACTACTACGCATAGTTTGGTTTTCTCGGCTGATTTCCTCTAGTTTTGGTGTTGTTAGTTTGTTTTTTTTTTTTCAGAGGCTGGAACTTGGGAGCTGTAACAGAAAATGACCAATTGGCAAATTCCGAATTATGAGATTCGTATGTTCTCATCTAGTTTTGTATCTGTAATGAATTTGTTCTGCTTAAAACTAGATTTGCTATTGTACCTGAGATGTTTAGTACAATATCATGAAAAAGTTATCCATTTGCTCACCCTCGGAACAAATATGATGTTTTTTTTATAGAGAAAACCGGTTCAAAAAAGAGGGGAGGGGCTGCATCTAGTTATTCAATCCTTATTGAAATTAGTACTTTCCCATCTTCCCCCCCTAATGCATTAGCAGATCAAGATACCTGTTTGTTTCGGTGATATACGAACTTGATTCCATCGGCAATTCAACATGGGATGGTTCTGTAGGTGAAGCAAGTCCACACTGCGTTAGGTTAGAATTCATTTTCGAGGCATTGTAAACGAAATTTCAAAAAGTGAAAAAACTTTTTGTGTAGTTGCTGCATTTTATATTTGGCATTCAGGCAATTGTTGTCTAATATCATCTCTTAGTACTGTTTAACTTTAACCAATCAAACGAAAACAAATATATATATAAGCAAGAAAAAG >Glyma08g05590.4 sequence type=transcript gene model=Glyma08g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAGCCCAATGATATGATATCAGATATGAGTTTTCTTTATAATTACTTTTAATCATAAAATATGACACGGGGTTTGGGCTTCATAAAATAGCCCAACAACACCAACACAGTCTTTCTTTAACCTTCCTCTTTAAGCGTAGAGGAAAAGCTTCAGTCTCTGACCATGGCGGATGGAAGCAGCGGGGAAATTCTAATGCTGGAAGCCCCAGCGTCTTACGGTAGGTCTAGCGATTCCGACGCGGAAATAATCGACGCATTGCCTTATATCGACGACGACTACGCAGACCCCAGAGTCAAACTGGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAATGATTTCCCTCCTCTTCCCAACTCCATTTTCCAGAACTACCCAATGATTGCCAGAGAGTACGAACGTGTGAGAGCTGGAAGGCCTCCCGTTGCTCTTGATAGATCGCGCTACGATTTGGAAATGCCGCCGCCCAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACGCCTGCTGCAATATCAGATCATCAGGATGGAAAATTTGGACTTGATGTTAAAATATGGTCCCGATACCTGGAAACAGCACAACCAGAGATTGGAAGTATACTTGTCAAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAACTGAAAAGAGAAGCAGCAGAAAGAGGCTGGAACTTGGGAGCTGTAACAGAAAATGACCAATTGGCAAATTCCGAATTATGAGATTCGTATGTTCTCATCTAGTTTTGTATCTGTAATGAATTTGTTCTGCTTAAAACTAGATTTGCTATTGTACCTGAGATGTTTAGTACAATATCATGAAAAAGTTATCCATTTGCTCACCCTCGGAACAAATATGATGTTTTTTTTATAGAGAAAACCGGTTCAAAAAAGAGGGGAGGGGCTGCATCTAGTTATTCAATCCTTATTGAAATTAGTACTTTCCCATCTTCCCCCCCTAATGCATTAGCAGATCAAGATACCTGTTTGTTTCGGTGATATACGAACTTGATTCCATCGGCAATTCAACATGGGATGGTTCTGTAGGTGAAGCAAGTCCACACTGCGTTAGGTTAGAATTCATTTTCGAGGCATTGTAAACGAAATTTCAAAAAGTGAAAAAACTTTTTGTGTAGTTGCTGCATTTTATATTTGGCATTCAGGCAATTGTTGTCTAATATCATCTCTTAGTACTGTTTAACTTTAACCAATCAAACGAAAACAAATATATATATAAGCAAGAAAAAG
>Glyma08g05590.1 sequence type=CDS gene model=Glyma08g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGATGGAAGCAGCGGGGAAATTCTAATGCTGGAAGCCCCAGCGTCTTACGGTAGGTCTAGCGATTCCGACGCGGAAATAATCGACGCATTGCCTTATATCGACGACGACTACGCAGACCCCAGAGTCAAACTGGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAATGATTTCCCTCCTCTTCCCAACTCCATTTTCCAGAACTACCCAATGATTGCCAGAGAGTACGAACGTGTGAGAGCTGGAAGGCCTCCCGTTGCTCTTGATAGATCGCGCTACGATTTGGAAATGCCGCCGCCCAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACGCCTGCTGCAATATCAGATCATCAGGATGGAAAATTTGGACTTGATGTTAAAATATGGTCCCGATACCTGGAAACAGCACAACCAGAGATTGGAAGTATACTTGTCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAACTGAAAAGAGAAGCAGCAGAAAGAGGCTGGAACTTGGGAGCTGTAACAGAAAATGACCAATTGGCAAATTCCGAATTATGA >Glyma08g05590.3 sequence type=CDS gene model=Glyma08g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGATGGAAGCAGCGGGGAAATTCTAATGCTGGAAGCCCCAGCGTCTTACGGTAGGTCTAGCGATTCCGACGCGGAAATAATCGACGCATTGCCTTATATCGACGACGACTACGCAGACCCCAGAGTCAAACTGGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAATGATTTCCCTCCTCTTCCCAACTCCATTTTCCAGAACTACCCAATGATTGCCAGAGAGTACGAACGTGTGAGAGCTGGAAGGCCTCCCGTTGCTCTTGATAGATCGCGCTACGATTTGGAAATGCCGCCGCCCAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACGCCTGCTGCAATATCAGATCATCAGGATGGAAAATTTGGACTTGATGTTAAAATATGGTCCCGATACCTGGAAACAGCACAACCAGAGATTGGAAGTATACTTGTCAAGAATGCAGAAATTAGCTCAGGAACAAAATGAAAAGATTGAAAAAGTAAACCGTGAAAGGAAATATCATCAGCAAAACACTGCATATGAGCTTAATGCGTTGTCCATGCAATGGAAGGAGCTTTGTCAGAAGAATATAGACATCAGTGCTGCCTGTGCTTCAGTTGAAAATCGCATAAATGAACTGAAAAGAGAAGCAGCAGAAAGGTGA >Glyma08g05590.4 sequence type=CDS gene model=Glyma08g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGATGGAAGCAGCGGGGAAATTCTAATGCTGGAAGCCCCAGCGTCTTACGGTAGGTCTAGCGATTCCGACGCGGAAATAATCGACGCATTGCCTTATATCGACGACGACTACGCAGACCCCAGAGTCAAACTGGAGGTTGACCGTCTCGTGGAGGATGAGATGCGTCGCAGCACCAAGAAGCCCACCGATTTCCTCAATGATTTCCCTCCTCTTCCCAACTCCATTTTCCAGAACTACCCAATGATTGCCAGAGAGTACGAACGTGTGAGAGCTGGAAGGCCTCCCGTTGCTCTTGATAGATCGCGCTACGATTTGGAAATGCCGCCGCCCAATAAAAGGAACGACGAAACTGCTTGGAAGCAAGCTCTTCATAGAGCTCAACGCCTGCTGCAATATCAGATCATCAGGATGGAAAATTTGGACTTGATGTTAAAATATGGTCCCGATACCTGGAAACAGCACAACCAGAGATTGGAAGTATACTTGTCAAGAAATTAG
>Glyma08g05590.1 sequence type=predicted peptide gene model=Glyma08g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADGSSGEILMLEAPASYGRSSDSDAEIIDALPYIDDDYADPRVKLEVDRLVEDEMRRSTKKPTDFLNDFPPLPNSIFQNYPMIAREYERVRAGRPPVALDRSRYDLEMPPPNKRNDETAWKQALHRAQRLLQYQIIRMENLDLMLKYGPDTWKQHNQRLEVYLSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENRINELKREAAERGWNLGAVTENDQLANSEL* >Glyma08g05590.3 sequence type=predicted peptide gene model=Glyma08g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADGSSGEILMLEAPASYGRSSDSDAEIIDALPYIDDDYADPRVKLEVDRLVEDEMRRSTKKPTDFLNDFPPLPNSIFQNYPMIAREYERVRAGRPPVALDRSRYDLEMPPPNKRNDETAWKQALHRAQRLLQYQIIRMENLDLMLKYGPDTWKQHNQRLEVYLSRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENRINELKREAAER* >Glyma08g05590.4 sequence type=predicted peptide gene model=Glyma08g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADGSSGEILMLEAPASYGRSSDSDAEIIDALPYIDDDYADPRVKLEVDRLVEDEMRRSTKKPTDFLNDFPPLPNSIFQNYPMIAREYERVRAGRPPVALDRSRYDLEMPPPNKRNDETAWKQALHRAQRLLQYQIIRMENLDLMLKYGPDTWKQHNQRLEVYLSRN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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